FMO07542.5prime Sequence
801 bp (331 high quality bases) assembled on 2008-10-22
> FMO07542.5prime
CAATCGACATGTTGAAATTCGCGGTACTTCTTTCCGTTTTGGCCTGCGCC
TTGGCTGGCACCATTCCCGATGGCCTGCTGCCCCAGTTGGATGGTCGTAT
CGTCCGTGGTTATGAGACCAGCATCGACACCCATCCCTACCAGGTGTCCT
TGCAGCGCTATGGATCACACTTCTGCGGTGGATCCATCTACTCCCACGAC
ATTGTGATCACCGCCGCTCACTGCCTGCAGACGATTGAGGCCAAGGACCT
GAATATTCGTGTGGGCAGCACCAACTGGCGCTCCGGCGGAAGTGTCCACT
CCGTTCGCTCCTTCCGCAACCACTAGGGCTACAAATCCCGCACCATGGTC
AACGACATTGCTATTATTCGCATCGAGTCCGATCTGAGCTTCCGCTCCAG
CATTCGCGAGATCCGTATTGCCGACTCCAACCCTCGTGAGGGCGCCACCG
CCGTGGTTTCCGGCTGGGGCACCACCGAGTCCGGTGGCATCACCATTCCC
GATCATCTGCTGGCCGTTGATCTGGAGATCATCGATGTGTCGCGTTGCCG
CTCGGATGACTTCGGATACTGAAAGAAGATCAAGGACACCATGCTCTGCG
CCTACGCCCCACACAAGGATGCCTGCCAAGGTGACTACGGTGGCCCACTT
GTCTCCGGAGACCGCCTTGTCGTTGTTGTGTCCTGGGGCTATGGATGCGG
TGATATGAAGTATCCCGGCGTCTACGCCGACGTTGCCCACTTCCACGAGT
GTATCGAGAGGACCGCCGAGGGAGGTGGCAAGTTTCTAGACCATTCGTTT
G
FMO07542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| epsilonTry-RA | 830 | CG18681-RA | 20..787 | 9..777 | 3550 | 97.5 | Plus |
| betaTry-RB | 1071 | CG18211-RB | 51..239 | 42..230 | 280 | 77.7 | Plus |
| betaTry-RA | 813 | CG18211-RA | 51..239 | 42..230 | 280 | 77.7 | Plus |
| betaTry-RB | 1071 | CG18211-RB | 576..745 | 567..736 | 205 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11345285..11346047 | 771..9 | 3545 | 97.6 | Minus |
| 2R | 25286936 | 2R | 11344365..11344487 | 736..614 | 255 | 80.5 | Minus |
| 2R | 25286936 | 2R | 11346375..11346563 | 42..230 | 255 | 75.7 | Plus |
| 2R | 25286936 | 2R | 11349128..11349250 | 736..614 | 255 | 80.5 | Minus |
| 2R | 25286936 | 2R | 11351432..11351554 | 614..736 | 255 | 80.5 | Plus |
| 2R | 25286936 | 2R | 11353632..11353754 | 736..614 | 255 | 80.5 | Minus |
| 2R | 25286936 | 2R | 11355938..11356060 | 614..736 | 255 | 80.5 | Plus |
| 2R | 25286936 | 2R | 11349503..11349822 | 361..42 | 250 | 71.9 | Minus |
| 2R | 25286936 | 2R | 11350860..11351179 | 42..361 | 250 | 71.9 | Plus |
| 2R | 25286936 | 2R | 11354007..11354326 | 361..42 | 250 | 71.9 | Minus |
| 2R | 25286936 | 2R | 11355366..11355685 | 42..361 | 250 | 71.9 | Plus |
| 2R | 25286936 | 2R | 11344871..11345061 | 230..40 | 220 | 74.3 | Minus |
| 2R | 25286936 | 2R | 11346900..11347069 | 567..736 | 205 | 74.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:09:24 has no hits.
FMO07542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:16 Download gff for
FMO07542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonTry-RA | 8..788 | 1..782 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:23 Download gff for
FMO07542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonTry-RA | 12..792 | 1..782 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:48 Download gff for
FMO07542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonTry-RA | 12..792 | 1..782 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:48 Download gff for
FMO07542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11345275..11346055 | 1..782 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:23 Download gff for
FMO07542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7232780..7233560 | 1..782 | 96 | | Minus |
