FMO07547.5prime Sequence
608 bp (608 high quality bases) assembled on 2008-10-22
> FMO07547.5prime
CAGTCGACATGGCAAACTTCGTGTGCTTCGTTATCCTTTCGTTGGCTCTC
TTCGCCAGTGTTGCTGTGGCGCGACCGGGATATGCCCTGGATTACTATGA
TCATCCAAAATATGCCTTTAACTACGGTGTGGCTGACCACAGTACAGGAG
ATGTGAAGTCACAGCACGAGACGCGAGATGGAGATGTGGTCAAGGGTCAG
TACTCTCTGGTTGAGCCCGATGGCTCCATTCGCACTGTGGACTACACGGC
GGACTCCATTCACGGCTTCAATGCCGTGGTGACCAAGTCGGGACCCACTG
TGCACGCCCAGGCTGTGGTGGCCAGTCCCATTGTGGCCCACAAGCCCGTC
CTGACCCACTACGAGCCGCAGGTAGTGAAGCACGTGGCTCCAGTGGCCCA
CGCTCCTCTGGTGGTGGCCTCCCCGGCGCCTTATGTGGCCAAGCACTATG
CTCCGGCGGCAGCTGCACCCATTCACTACGACTACGATGATGGCTACTAC
AACCAGGGCCAGCAGTACGAGTACATCCCACAGTATGATCAGTACAGCGG
CCACTACGGCCACTATGCGAGTCCCTATGCGGGCCACTACGCAAGCTTTC
TAGACCAT
FMO07547.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bb-RC | 926 | CG13935-RC | 141..722 | 9..590 | 2910 | 100 | Plus |
| Cpr62Bb-RB | 992 | CG13935-RB | 207..788 | 9..590 | 2910 | 100 | Plus |
| Cpr62Bb-RA | 904 | CG13935-RA | 119..700 | 9..590 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1834289..1834529 | 435..195 | 1205 | 100 | Minus |
| 3L | 28110227 | 3L | 1832840..1832995 | 590..435 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 1834581..1834683 | 201..99 | 500 | 99 | Minus |
| 3L | 28110227 | 3L | 1834868..1834958 | 99..9 | 455 | 100 | Minus |
| 3L | 28110227 | 3L | 8337917..8338067 | 104..254 | 320 | 80.8 | Plus |
| 3L | 28110227 | 3L | 1840981..1841166 | 305..120 | 255 | 75.8 | Minus |
| 3R | 32079331 | 3R | 19598130..19598256 | 280..154 | 230 | 78.7 | Minus |
| 2L | 23513712 | 2L | 11945262..11945344 | 168..250 | 205 | 83.1 | Plus |
| 3L | 28110227 | 3L | 19537245..19537296 | 173..224 | 185 | 90.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:05 has no hits.
FMO07547.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:06 Download gff for
FMO07547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bb-RB | 209..790 | 9..590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:32 Download gff for
FMO07547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bb-RA | 119..700 | 9..590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:13 Download gff for
FMO07547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bb-RA | 119..700 | 9..590 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:13 Download gff for
FMO07547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1832840..1832994 | 436..590 | 100 | <- | Minus |
| 3L | 1834289..1834528 | 196..435 | 100 | <- | Minus |
| 3L | 1834587..1834683 | 99..195 | 100 | <- | Minus |
| 3L | 1834869..1834958 | 9..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:32 Download gff for
FMO07547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1832840..1832994 | 436..590 | 100 | <- | Minus |
| arm_3L | 1834289..1834528 | 196..435 | 100 | <- | Minus |
| arm_3L | 1834587..1834683 | 99..195 | 100 | <- | Minus |
| arm_3L | 1834869..1834958 | 9..98 | 100 | | Minus |
