FMO07548.5prime Sequence
846 bp (846 high quality bases) assembled on 2008-10-22
> FMO07548.5prime
CAGTCGACATGAAATTCGCCTGCGCTACGGTTCTGCTCTTGGCCACCATT
CTTGGGGCCCAGGCTGTGGACTGGAATTCGGTCAAGAACCTGAACATCGA
GACCCCGATGCCCAAGGTCCATGGCGAGACCCTGCCCAGCGGTAGGATTA
CTGGAGGACAGATTGCCGAGCCCAACCAGTTCCCCTACCAGGTGGGACTA
CTGCTGTACATCACTGGAGGAGCTGCCTGGTGCGGAGGCACCATCATCAG
TGACCGCTGGATCATCACCGCCGCCCATTGCACGGACAGCCTGACCACCG
GAGTGGATGTCTACCTGGGCGCCCACGATCGCACCAACGCCAAGGAGGAG
GGACAGCAGATCATCTTCGTGGAGACAAAGAATGTGATCGTGCACGAGGA
TTGGATAGCCGAGACCATCACCAACGACATTTCCCTGATCAAGTTGCCAG
TGCCCATTGAGTTCAACAAGTACATCCAGCCCGCTAAGCTGCCCGTGAAA
TCCGACAGCTACAGCACCTACGGCGGAGAGAATGCCATTGCCTCCGGATG
GGGCAAGATCAGCGACTCTGCTACCGGAGCGACCGACATTTTGCAGTACG
CTACGGTTCCCATCATGAACAACAGCGGCTGCTCTCCCTGGTACTTCGGT
CTGGTTGCCGCCAGCAACATTTGCATCAAGACCACCGGCGGAATTTCCAC
CTGCAAACGGCGACTCCGGCGGTCCTTTTGGTCCTGGATGACGGCAGCAA
CACCCCTGAATGGGAGCCACCTCCTTTCGGCATTGCTCTCGGCTGCGAGG
TGGGATGGCCCGGTGGTCTTCCACCCGTAATCACCTACTATCTGGG
FMO07548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10472-RA | 936 | CG10472-RA | 18..846 | 9..845 | 3940 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6062434..6062893 | 468..9 | 2285 | 99.8 | Minus |
| 3L | 28110227 | 3L | 6061489..6061731 | 815..568 | 980 | 96.8 | Minus |
| 3L | 28110227 | 3L | 6062274..6062372 | 567..469 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:50:59 has no hits.
FMO07548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:04:20 Download gff for
FMO07548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10472-RA | 7..842 | 1..846 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:31 Download gff for
FMO07548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10472-RA | 11..846 | 1..846 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:26 Download gff for
FMO07548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10472-RA | 11..846 | 1..846 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:26 Download gff for
FMO07548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6061461..6061731 | 568..846 | 96 | <- | Minus |
| 3L | 6062274..6062372 | 469..567 | 100 | <- | Minus |
| 3L | 6062434..6062899 | 1..468 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:31 Download gff for
FMO07548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6054561..6054831 | 568..846 | 96 | <- | Minus |
| arm_3L | 6055374..6055472 | 469..567 | 100 | <- | Minus |
| arm_3L | 6055534..6055999 | 1..468 | 98 | | Minus |
