FMO07553.5prime Sequence
437 bp (437 high quality bases) assembled on 2008-10-22
> FMO07553.5prime
CAGTCGACATGAAGGGAGCAGTTGATGGTGGTCTAAACATACCTCACTCT
GTGAAACGCTTTCCTGGATACTCTGCTGAAACCAAGAGCTTTAATGCCGA
TGTGCATCGCGCTCATATATTTGGCCAGCACGTTGCAGACTATATGCGTT
CTTTGGAGGAGGAGGATGAGGAGAGCTTCAAAAGGCAGTTTAGCCGATAC
ATCAAGTTGGGCATTCGTGCTGATGATCTTGAGGATATCTATAAAAAAGC
CCACCAGGCAATTCGTAACGACCCTACACACAAGGTCACCGCTAAGAAGT
CTTCTGCCGTTACAAAGAAAAGGTGGAATGCTAAGAAACTCACAAACGAG
CAACGGAAGACTAAGATTGCAGCTCATAAGGCAGCATATGTTGCCAAGCT
GCAGTCTGAAACTGAGGCTGCAAGCTTTCTAGACCAT
FMO07553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL5-RG | 1945 | CG17489-RG | 580..990 | 9..419 | 2040 | 99.8 | Plus |
| RpL5-RH | 3835 | CG17489-RH | 832..1242 | 9..419 | 2040 | 99.8 | Plus |
| RpL5-RB | 1024 | CG17489-RB | 543..953 | 9..419 | 2040 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22535617..22535835 | 227..9 | 1095 | 100 | Minus |
| 2L | 23513712 | 2L | 22534872..22535063 | 419..228 | 945 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:14 has no hits.
FMO07553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:33 Download gff for
FMO07553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL5-RB | 576..993 | 5..423 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:00 Download gff for
FMO07553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL5-RA | 562..979 | 5..423 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:23 Download gff for
FMO07553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL5-RB | 539..956 | 5..423 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:23 Download gff for
FMO07553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22534868..22535063 | 228..423 | 98 | <- | Minus |
| 2L | 22535617..22535839 | 5..227 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:00 Download gff for
FMO07553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22427600..22427795 | 228..423 | 98 | <- | Minus |
| arm_2L | 22428349..22428571 | 5..227 | 99 | | Minus |
