Clone FMO07555 Report

Search the DGRC for FMO07555

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:75
Well:55
Vector:pMK33-CFH-BD
Associated Gene/TranscriptUbcD10-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07555.5prime Sequence

488 bp (488 high quality bases) assembled on 2008-10-22

> FMO07555.5prime
CAGTCGACATGACTGCGCCGCGACGCCTGCGAAAAGAATTGAGCGATTTG
CAGGGCAACGCACTGAAGTCCTTCCGGGACATTAAGGCGGACGATGACAA
CCTGCTGCGCTGGACGGGATTGATTGTCCCGGACAATCCGCCGTACAACA
AGGGCGCCTTCCGCATCGAGATCAACTTTCCGGCGGAGTATCCTTTCAAG
CCGCCCAAGATTAACTTTAAGACACGCATCTACCATCCAAACATCGATGA
GAAGGGCCAGGTGTGCTTGCCCATTATCAGTACGGAGAACTGGAAACCGG
CCACACGCACCGACCAGGTCGTGCAGGCACTGGTGGACTTAATCAACGAC
CCTGAGCCGGAGCATCCGCTGCGGGCGGAGTTGGCCGAGGAGTTTCTTAA
GGATCGCAAAAAATTCGTGAAAAACGCCGAGGACTACACCAAGAAGCACA
GCGAAAAACGTCCGGCCGACGCAAGCTTTCTAGACCAT

FMO07555.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc10-RA 999 CG5788-RA 309..770 9..470 2310 100 Plus
Ubc84D-RA 637 CG12799-RA 191..536 101..446 440 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17788641..17789102 470..9 2310 100 Minus
3R 32079331 3R 7518921..7519266 446..101 440 75.1 Minus
Blast to na_te.dros performed on 2014-11-28 23:31:53 has no hits.

FMO07555.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:36 Download gff for FMO07555.5prime
Subject Subject Range Query Range Percent Splice Strand
UbcD10-RA 301..773 1..476 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:23 Download gff for FMO07555.5prime
Subject Subject Range Query Range Percent Splice Strand
UbcD10-RA 302..774 1..476 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:02 Download gff for FMO07555.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc10-RA 302..774 1..476 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:02 Download gff for FMO07555.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17788637..17789109 1..476 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:23 Download gff for FMO07555.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13676142..13676614 1..476 98   Minus