FMO07558.5prime Sequence
533 bp (533 high quality bases) assembled on 2008-10-22
> FMO07558.5prime
CAGTCGACATGGACGGATTTATGATGGATATCATCAAGGGCATGTGCATC
ATGGACAACGATGGCAACCGCATCCTGGCCAAGTACTACGACAAGAACAT
CCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAGAATCTGTTCAATA
AGACGCACCGCTCCAACACGGAGATCATTATGCTGGACGGACTCACCTGC
GTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGATGGGCAACGCCTA
CGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGCCTCTACGATTCCA
TTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCTGGTGCTGGAAAAC
CTGGAGATCATCATGCTGGCATTTGACGAGATCTGCGACGGAGGCATTAT
TCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTTGATCTGCGCAACG
ATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGTAACTAACACCCTT
AATGGTCTATTTTGGGCAAGCTTTCTAGACCAT
FMO07558.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaCOP-RB | 1030 | CG3948-RB | 39..545 | 9..515 | 2535 | 100 | Plus |
| zetaCOP-RA | 694 | CG3948-RA | 39..517 | 9..487 | 2395 | 100 | Plus |
| zetaCOP-RC | 671 | CG3948-RC | 34..494 | 27..487 | 2305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16673057..16673425 | 394..26 | 1845 | 100 | Minus |
| 3L | 28110227 | 3L | 16672424..16672545 | 515..394 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:21 has no hits.
FMO07558.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:22 Download gff for
FMO07558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaCOP-RB | 30..545 | 1..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:36 Download gff for
FMO07558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaCOP-RB | 30..545 | 1..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:46 Download gff for
FMO07558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaCOP-RB | 30..545 | 1..515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:46 Download gff for
FMO07558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16672424..16672544 | 395..515 | 100 | <- | Minus |
| 3L | 16673057..16673424 | 27..394 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:36 Download gff for
FMO07558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16665524..16665644 | 395..515 | 100 | <- | Minus |
| arm_3L | 16666157..16666524 | 27..394 | 100 | <- | Minus |
