Clone FMO07560 Report

Search the DGRC for FMO07560

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:75
Well:60
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG32667-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07560.5prime Sequence

290 bp (290 high quality bases) assembled on 2008-10-22

> FMO07560.5prime
CAGTCGACATGAAATCGGTCACGTTCGTACTCTGCCTGCTCGTTCTGGGC
GCCCACTCGCTGCTGGTGTTCGCCGTGGATTGCGAGATCGGTGGGCATCA
GTTCAAGACCGGAGAGAAGTACACGCCGGAAGGTCGCTGCCTGCAGTACA
CCTGCCAGGCACCCAAACAGGTGACTGCCTTGGGATGCCCGGCCATCGCC
TCCTTGAAGCCCTGCAAAATGGAAGAGGATCTGAGCAAACCCTATCCCGG
CTGCTGTCCCAAGTTCAACTGCGCAAGCTTTCTAGACCAT

FMO07560.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
ssp7-RA 368 CG32667-RA 20..283 9..272 1320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11140001..11140110 184..75 550 100 Minus
X 23542271 X 11139847..11139935 272..184 445 100 Minus
X 23542271 X 11140178..11140244 75..9 335 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:34:55 has no hits.

FMO07560.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:25 Download gff for FMO07560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32667-RA 14..289 1..276 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:39 Download gff for FMO07560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32667-RA 14..289 1..276 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:15 Download gff for FMO07560.5prime
Subject Subject Range Query Range Percent Splice Strand
ssp7-RA 14..289 1..276 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:15 Download gff for FMO07560.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11139841..11139934 185..276 97 <- Minus
X 11140001..11140109 76..184 100 <- Minus
X 11140178..11140250 1..75 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:39 Download gff for FMO07560.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11033874..11033967 185..276 97 <- Minus
arm_X 11034034..11034142 76..184 100 <- Minus
arm_X 11034211..11034283 1..75 94   Minus