Clone FMO07561 Report

Search the DGRC for FMO07561

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:75
Well:61
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31775-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07561.5prime Sequence

293 bp (293 high quality bases) assembled on 2008-10-22

> FMO07561.5prime
CAGTCGACATGAAGTTTTTGATCCTCTTCATTGCCCTATTCGCCGCGGCC
GCTGCCCTACCTCAGTTTGGATTCGGCGGTGGATTCGGTGATCAGCAGCA
GCAGCAGCAAGGAGGATTTGGAGGTGGATTTGGTGATCAGCAGCAGCAGC
AAGGAGGATTTGGCGGTGGATTCGGAGGTGGATTCGGTGATCAGCAGCAG
CAGCAGCAAGGGGGATTTGGAGGTGGATTCGGAGGTGGATTCGGTGATCA
GCAGCAGCAACAGCAACAAGGCTGGGCAAGCTTTCTAGACCAT

FMO07561.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31775-RB 371 CG31775-RB 39..306 8..275 1325 99.6 Plus
CG31775-RA 613 CG31775-RA 39..306 8..275 1325 99.6 Plus
CG42586-RB 613 CG42586-RB 39..306 8..275 1325 99.6 Plus
CG31775-RB 371 CG31775-RB 145..297 69..209 415 85.6 Plus
CG31775-RA 613 CG31775-RA 145..297 69..209 415 85.6 Plus
CG31775-RB 371 CG31775-RB 100..240 114..266 400 85 Plus
CG31775-RA 613 CG31775-RA 100..240 114..266 400 85 Plus
CG31775-RB 371 CG31775-RB 198..260 68..130 300 98.4 Plus
CG31775-RA 613 CG31775-RA 198..260 68..130 300 98.4 Plus
CG31775-RB 371 CG31775-RB 99..161 167..229 285 96.8 Plus
CG31775-RA 613 CG31775-RA 99..161 167..229 285 96.8 Plus
CG31775-RB 371 CG31775-RB 99..141 224..266 185 95.3 Plus
CG31775-RB 371 CG31775-RB 255..297 68..110 185 95.3 Plus
CG31775-RA 613 CG31775-RA 99..141 224..266 185 95.3 Plus
CG31775-RA 613 CG31775-RA 255..297 68..110 185 95.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14737397..14737652 275..20 1265 99.6 Minus
2L 23513712 2L 14741468..14741723 275..20 1265 99.6 Minus
2L 23513712 2L 14737406..14737558 209..69 365 85.6 Minus
2L 23513712 2L 14741477..14741629 209..69 365 85.6 Minus
2L 23513712 2L 14737463..14737603 266..114 350 85 Minus
2L 23513712 2L 14741534..14741674 266..114 350 85 Minus
2L 23513712 2L 14737443..14737505 130..68 300 98.4 Minus
2L 23513712 2L 14741514..14741576 130..68 300 98.4 Minus
2L 23513712 2L 14737542..14737604 229..167 285 96.8 Minus
2L 23513712 2L 14741613..14741675 229..167 285 96.8 Minus
2L 23513712 2L 14737406..14737448 110..68 185 95.3 Minus
2L 23513712 2L 14737562..14737604 266..224 185 95.3 Minus
2L 23513712 2L 14741477..14741519 110..68 185 95.3 Minus
2L 23513712 2L 14741633..14741675 266..224 185 95.3 Minus
Blast to na_te.dros performed 2014-11-28 22:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6830 247..270 111 95.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2429 190..269 110 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6754 247..269 106 95.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6775 247..269 106 95.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6796 247..269 106 95.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2396 247..269 106 95.7 Plus

FMO07561.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:43 Download gff for FMO07561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31775-RA 30..306 1..279 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:40 Download gff for FMO07561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42586-RB 33..309 1..279 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:24 Download gff for FMO07561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42586-RB 33..309 1..279 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:24 Download gff for FMO07561.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14737393..14737651 21..279 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:40 Download gff for FMO07561.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14737393..14737651 21..279 98 <- Minus