FMO07563.5prime Sequence
215 bp (215 high quality bases) assembled on 2008-10-22
> FMO07563.5prime
CAGTCGACATGAACTTCTACAAGATCTTCGTTTTCGTCGCCCTCATCCTG
GCCATCAGCATTGGACAATCGGAAGCCGGTTGGCTGAAGAAACTTGGCAA
GAGAATCGAGCGCATTGGCCAGCACACCCGGGATGCAACCATTCAAGGAC
TGGGAATTGCGCAACAGGCCGCCAATGTGGCAGCCACCGCCAGAGGAGCA
AGCTTTCTAGACCAT
FMO07563.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CecC-RA | 386 | CG1373-RA | 93..282 | 8..197 | 950 | 100 | Plus |
CecA1-RA | 339 | CG1365-RA | 74..262 | 8..196 | 585 | 87.3 | Plus |
CecA2-RA | 355 | CG1367-RA | 82..261 | 8..187 | 570 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30216576..30216676 | 8..108 | 505 | 100 | Plus |
3R | 32079331 | 3R | 30216745..30216834 | 108..197 | 450 | 100 | Plus |
3R | 32079331 | 3R | 30210947..30211047 | 8..108 | 385 | 92.1 | Plus |
3R | 32079331 | 3R | 30212237..30212337 | 8..108 | 385 | 92.1 | Plus |
3R | 32079331 | 3R | 30213626..30213730 | 108..4 | 225 | 81 | Minus |
3R | 32079331 | 3R | 30211111..30211196 | 111..196 | 205 | 82.6 | Plus |
3R | 32079331 | 3R | 30212402..30212474 | 115..187 | 200 | 84.9 | Plus |
3R | 32079331 | 3R | 30213486..30213565 | 190..111 | 190 | 82.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:20 has no hits.
FMO07563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:45 Download gff for
FMO07563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecC-RA | 86..290 | 1..206 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:05 Download gff for
FMO07563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecC-RA | 86..290 | 1..206 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:27 Download gff for
FMO07563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecC-RA | 86..290 | 1..206 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:27 Download gff for
FMO07563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30216569..30216675 | 1..107 | 96 | -> | Plus |
3R | 30216745..30216842 | 108..206 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:05 Download gff for
FMO07563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26042291..26042397 | 1..107 | 96 | -> | Plus |
arm_3R | 26042467..26042564 | 108..206 | 96 | | Plus |