FMO07574.5prime Sequence
721 bp (688 high quality bases) assembled on 2008-10-22
> FMO07574.5prime
CAGTCGACATGAAGCATTGGCCCTTCGAGGTGTTCGCCGAGAACGGAAAG
CCACGCATCCGTGTGGAGTACAAGGGCGAACGGAAGAGCTTCTATCCGGA
GGAGGTGTCCTCGATGGTGCTGACGAAAATGCGAGAGACCGCGGAGGCCT
ACCTGGGCGGCACGGTGACAGATGCGGTTGTCACCGTTCCGGCGTACTTC
AACGACTCCCAGCGCCAGGCCACCAAGGATGCGGGTGCCATTGCAGGATT
GAATGTCCTTCGCATTATCAACGAACCAACGGCGGCGGCCATAGCCTACG
GCTTGGATAAGCAGGGCACCAGCGAACGAAATGTCTTGATCTTCGACCTT
GGTGGTGGCACCTTCGACGTTTCTGTGCTGACCATCGAGGATGGCATCTT
CGAGGTGAAGGCAACCGCTGGCGACACCCATCTCGGCGGCGAGGACTTCG
ATAACCGGCTGGTGAACCACTTTCGTACAGGAGTTTTCAGCGCAAACATA
AGAAAGGATCTGGGCCAGAACAAGCGGGCTTTGAGGCGACTCCGAACCGC
GTGTGAAAAGGGCAAAACGCACCCCTCTCCTCATCCCACGCCAGGCCAGC
ATCTAGATCGATTCCCCTCTTTGAGGTCGTCGACTTCCTACACCTCCGGT
GACACGGGCCCGCTCCAAAAGTTAATGGCGATTCTGTTCCAAGTCCTTGG
AACCATGGCCAAGGCCTGCTT
FMO07574.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc70-1-RD | 2543 | CG8937-RD | 743..1452 | 1..715 | 3075 | 96.7 | Plus |
| Hsc70-1-RA | 2168 | CG8937-RA | 368..1077 | 1..715 | 3075 | 96.7 | Plus |
| Hsc70-1-RC | 2611 | CG8937-RC | 811..1520 | 1..715 | 3075 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13975967..13976615 | 6..664 | 2750 | 98 | Plus |
| 3R | 32079331 | 3R | 13045666..13046136 | 6..473 | 595 | 75.6 | Plus |
| 3R | 32079331 | 3R | 15244615..15245081 | 6..472 | 535 | 74.3 | Plus |
| 3R | 32079331 | 3R | 24056388..24056858 | 473..6 | 520 | 74.5 | Minus |
| 3R | 32079331 | 3R | 11955586..11956043 | 460..6 | 440 | 73.6 | Minus |
| 3R | 32079331 | 3R | 11959035..11959492 | 6..460 | 440 | 73.6 | Plus |
| 3R | 32079331 | 3R | 12466844..12467311 | 470..6 | 415 | 73.1 | Minus |
| 3R | 32079331 | 3R | 12506281..12506748 | 6..470 | 415 | 73.1 | Plus |
| 3R | 32079331 | 3R | 12509564..12510031 | 6..470 | 415 | 73.1 | Plus |
| 3R | 32079331 | 3R | 12502998..12503465 | 6..470 | 400 | 72.9 | Plus |
| X | 23542271 | X | 11803941..11804118 | 315..138 | 275 | 77 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:25 has no hits.
FMO07574.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:58 Download gff for
FMO07574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-1-RC | 695..1376 | 1..690 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:39 Download gff for
FMO07574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-1-RC | 811..1492 | 1..690 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:48 Download gff for
FMO07574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-1-RC | 811..1492 | 1..690 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:48 Download gff for
FMO07574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13975961..13976642 | 1..690 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:39 Download gff for
FMO07574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13969061..13969742 | 1..690 | 97 | | Plus |
