FMO07575.5prime Sequence
1030 bp (947 high quality bases) assembled on 2008-10-22
> FMO07575.5prime
CAGTCGACATGATGCGCATGTTCCGTTACACCAACACATTGCAGCGTACT
GCAAAGATCAGTCACGTCCTGTGGGCCCGTAACTATGCAAAGGATGTTAG
GTTCGGGCCGGAGGTGAGGGCCATGATGCTGCAGGGAGTGGACGTGCTGG
CGGATGCCGTGGCCGTGACCATGGGACCAAAGGGACGCAACGTGATCATC
GAGCAGAGCTGGGGATCGCCAAAGATTACCAAGGACGGCGTGACGGTGGC
CAAGTCGATTGCCCTCAAGGACAAGTTCCAGAATATCGGCGCCAAACTGG
TGCAGGATGTGGCGAACAACACGAACGAGGAGGCAGGTGATGGCACCACC
ACGGCCACCGTTCTGGCCCGCGCCATTGCCAAGGAGGGATTCGAGAAGAT
TTCACGGGGTGCCAGTCCGGTGGAGATCCGCCGCGGAGTTATGCTAGCCA
TCGAGACGGTCAAGGACAACCTTCGTCGGTTGTCCCGGCCAGTTAACACG
CCCGAGGAGATCTGCCAGGTGGCGACGATCTCTGCGAACGGCGACAAGTC
GGTGGGAAACCTCATCAGCGAGGCCATCAAGAAGGTGGGTCGAGACGGCG
TTATCACTGTCAAGGATGGCAAGACCCTTTGCGACGAACTGGAGGTGATC
GAGGGCATGAAATTTGACCGTGGTTACATTTCGCCTTACTTTATTAACAC
CTCCAAAGGAGCAAAGGTGGAGTTCCAGGACGCGCTTCTCCTCTTTTGCG
AGAAGAAAATCAAGTCGGCACCTAGCATCGTGCCTGCCCTGGAGTTGGCC
AACGCTCACCGCAAGCCCTTGGTCATTATCGCTGAGGACTTGGAGGCGAA
GGCACTCAGCCTCTGGTGGTGAACCGCCTAAAGGTGGGCCTCCGAGTGTG
CGCGGTTGAAGGACCCGGTTTTGGTGACAATCGCAGGAAAATCTGATGGA
ATGGCCGGGCACCGGTGGAATCGTGTTTGGAACAACCCATAATGGACGGT
CAAGATATCAGAATGAGCCAATTTGGACGT
FMO07575.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60C-RC | 2093 | CG7235-RC | 196..1235 | 1..1030 | 4695 | 97.5 | Plus |
| Hsp60C-RA | 2162 | CG7235-RA | 265..1304 | 1..1030 | 4695 | 97.5 | Plus |
| Hsp60C-RB | 2029 | CG7235-RB | 134..1171 | 3..1030 | 4685 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5668943..5669926 | 3..981 | 4540 | 98.4 | Plus |
| X | 23542271 | X | 11110103..11110912 | 83..891 | 1705 | 81 | Plus |
| 2L | 23513712 | 2L | 728599..728929 | 118..448 | 425 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:32 has no hits.
FMO07575.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:59 Download gff for
FMO07575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RC | 196..1197 | 1..995 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:13 Download gff for
FMO07575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RA | 265..1266 | 1..995 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:34 Download gff for
FMO07575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RA | 265..1266 | 1..995 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:34 Download gff for
FMO07575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5668940..5669942 | 1..995 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:13 Download gff for
FMO07575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5668940..5669942 | 1..995 | 98 | | Plus |
