FMO07584.5prime Sequence
595 bp (595 high quality bases) assembled on 2008-10-22
> FMO07584.5prime
CAGTCGACATGACGTGCCTGTCGGACATTGACCTGGCCACCCTGCACCAG
CATCGCCTGGAGGAGATCTTCAGCTACAAGCTGGCTTGGAGTGGCACTGG
CCATCAGCAGACCCAGTACAATGATCTCCTCGTGCGCCACAATGCGTCGC
TAAAGCGACAGAGAATCATCCAACACACGGCCAATAGGGCCAGCACAAGG
GCCAAGGATCAAGCATCCACTGATGATTGTGTGGCCACCAGTCCAGGAAA
CATTCAGGCCAAATCCGAACAGGATCCGGATGACGGCTACTTCGATTCCA
CGACACGACGCACGCGTAGTGGCACTTGGCCGCGCACTAGAAGTCTGAAT
GCTCCGTCGCCATTCCAGCATTTCGGGCCATGTGGTCGCATTATGAAGAA
CTCCGCCATGGTGATGCAGATTCAGGATCCGGCCAGTCAGCGTTTGACCT
GGTACAAGCCACCTCTCACCGTACTCGTGATCAAAAAGAAGGACTCACAG
GTCCTGCCGCCCTTCGTTCAGCTGGTGGAGTGGCTGGTGCAGGAGAAGCA
CATGGTCGTCTGGGTGGAGTCAGCCGTCTTAGAGGACAAGCTGCT
FMO07584.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RC | 2260 | CG6145-RC | 221..809 | 7..595 | 2945 | 100 | Plus |
| CG6145-RB | 1826 | CG6145-RB | 111..375 | 331..595 | 1325 | 100 | Plus |
| CG6145-RF | 1989 | CG6145-RF | 275..538 | 332..595 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13542160..13542485 | 332..7 | 1630 | 100 | Minus |
| 2R | 25286936 | 2R | 13539086..13539349 | 595..332 | 1320 | 100 | Minus |
| 2R | 25286936 | 2R | 13549668..13549916 | 577..332 | 580 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:36 has no hits.
FMO07584.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:55 Download gff for
FMO07584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 207..802 | 1..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:24 Download gff for
FMO07584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 214..809 | 1..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:31 Download gff for
FMO07584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 214..809 | 1..595 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:31 Download gff for
FMO07584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13542161..13542490 | 1..331 | 98 | | Minus |
| 2R | 13539086..13539349 | 332..595 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:24 Download gff for
FMO07584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9426591..9426854 | 332..595 | 100 | <- | Minus |
| arm_2R | 9429666..9429995 | 1..331 | 98 | | Minus |
