FMO07601.5prime Sequence
437 bp (437 high quality bases) assembled on 2008-11-03
> FMO07601.5prime
CAGTCGACATGGACGACTTAAATCCGCTGGCGGGCACTGCTCACCTCCTG
GAAGAGGTTGACAAGAAACTGATGGTACTTTTGAGAGACGGACGGACTCT
GATTGGATACCTGCGGTCCGTGGACCAGTTCGCCAACCTGGTGCTGCAAC
GCACCATCGAGCGGATACATGTGGGCAACGAATACGGCGACATTCCTCGC
GGAGTCTTCATCATTCGCGGGGAGAATGTGGTGCTACTGGGCGAAATAGA
CCGTGAAAAGGAGCAGAAACTGCCACTCAAAGAGATATCCGTCGATGAAA
TCCTGGACGCCCAGCGTAGGGAACAGGAGCAGCGGCAGGAGAAACACCGC
CTAGTATCCAAGGCACTAAAGGAACGAGGCCTGGCCGTATATGCCAACAT
AATCAACGAGGACTTCTGCGCAAGCTTTCTAGACCAT
FMO07601.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LSm1-RA | 588 | CG4279-RA | 78..489 | 8..419 | 2030 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21170300..21170485 | 249..64 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 21170068..21170238 | 419..249 | 840 | 99.4 | Minus |
| 2R | 25286936 | 2R | 21170540..21170595 | 63..8 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:55:05 has no hits.
FMO07601.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:35 Download gff for
FMO07601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4279-RA | 46..466 | 1..424 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:56 Download gff for
FMO07601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LSm1-RA | 73..493 | 1..424 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:15 Download gff for
FMO07601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LSm1-RA | 73..493 | 1..424 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:15 Download gff for
FMO07601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21170064..21170238 | 249..424 | 98 | <- | Minus |
| 2R | 21170301..21170485 | 64..248 | 100 | <- | Minus |
| 2R | 21170540..21170600 | 1..63 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:56 Download gff for
FMO07601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17057569..17057743 | 249..424 | 98 | <- | Minus |
| arm_2R | 17057806..17057990 | 64..248 | 100 | <- | Minus |
| arm_2R | 17058045..17058105 | 1..63 | 93 | | Minus |
