FMO07604.5prime Sequence
645 bp (223 high quality bases) assembled on 2008-11-03
> FMO07604.5prime
CAATCCACATGGGTCAAGATTCGGCAGCCGAAAATCGGTGGACCGGTTGT
AATCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTCATTGATGGAAA
GTCACCGAATCCCGGGGATAATATTGTTTATGTGGCTGGCGCCTTCCATC
TCTTCCATGTGGGTCACCTGGACTTTCTGGAAAAGGCTAATAAACTGGGT
GACTATCTGATTGTTGGCCTGCACACCGATCCCGTGGTGAACTCCTACAA
GGGCAACAACTATCCCATTATGAATCTGCACGAGCGCGTGCTCAGTGTTT
TGGCCTGCAAGTTTGTCAATGAGGTAGTAATCGGAGCTCCCTACTGTGTC
ACTGAAGAGCTGCTTGAGCACTTCAAAATCTATGTTGTCTGTCATGGACG
CACACCCATTGCGCTTGAGAATGGCAAGATCGATCCTTATGCCGTTCCCA
AGACGCGAGCCATCTTTGAGCTGATCGATTCCGGCAACGAGATGACCACG
GAGCGCATCGATGGAGCGCATCATCTCGCACCGACTGGAATATGAGCGTC
GCAATCAGGCCAAAGAAAAGAAGGAAATCGAAGCCTTTGAGGCACTTCAA
CGCCAAAAACAGACCCACTAGGCCGGCGCAAGCTTTCTACACCAT
FMO07604.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-RD | 2174 | CG5547-RD | 952..1571 | 7..627 | 2855 | 97.4 | Plus |
| Pect-RB | 2210 | CG5547-RB | 988..1607 | 7..627 | 2855 | 97.4 | Plus |
| Pect-RC | 2153 | CG5547-RC | 940..1550 | 16..627 | 2810 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13209909..13210225 | 310..627 | 1480 | 98.4 | Plus |
| 2L | 23513712 | 2L | 13209660..13209845 | 126..311 | 870 | 97.8 | Plus |
| 2L | 23513712 | 2L | 13209481..13209601 | 7..127 | 500 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:39 has no hits.
FMO07604.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:30 Download gff for
FMO07604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 976..1605 | 1..633 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:07 Download gff for
FMO07604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 982..1611 | 1..633 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:57 Download gff for
FMO07604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RB | 982..1611 | 1..633 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:57 Download gff for
FMO07604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13209660..13209845 | 126..311 | 97 | -> | Plus |
| 2L | 13209475..13209599 | 1..125 | 91 | -> | Plus |
| 2L | 13209911..13210229 | 312..633 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:07 Download gff for
FMO07604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13209475..13209599 | 1..125 | 91 | -> | Plus |
| arm_2L | 13209660..13209845 | 126..311 | 97 | -> | Plus |
| arm_2L | 13209911..13210229 | 312..633 | 97 | | Plus |
