FMO07609.5prime Sequence
611 bp (611 high quality bases) assembled on 2008-11-03
> FMO07609.5prime
CAGTCGACATGACCGCCGTTGATGCTATAATCAATTACAAGCGCAGTCCC
AACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCATCGCCCGA
GCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCATCCCGACA
AGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGTTAAAGGAG
GCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTACGACAAGTG
GCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGGCATGAAGG
AGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAGTGGATAAA
GAGTCCATGCACTGGGTAACACCCAAGACCAAGGATCGCATGCTGCCCGA
AACCGGTGGAGCAGCTGCCCAGGGACCTGGAACCGGTGCAGGATGCAGCA
GCGGTGGCCTGACCGCAACATCCCCCAATCCCGCCCACCGGCGGGCCTCG
GAGGGCGGGGCGGCCTTGTACTACGGGAGTCGCAAGGGCGAGTGGGGCGG
CGAGAACACCGATGTGGCCAACAAGTTCCGCAACTACGAGATCGCAAGCT
TTCTAGACCAT
FMO07609.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jdp-RA | 1960 | CG2239-RA | 101..685 | 9..593 | 2880 | 99.5 | Plus |
| jdp-RC | 663 | CG2239-RC | 101..445 | 9..353 | 1710 | 99.7 | Plus |
| jdp-RB | 1921 | CG2239-RB | 101..406 | 9..314 | 1515 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30518334..30518575 | 593..352 | 1180 | 99.2 | Minus |
| 3R | 32079331 | 3R | 30519608..30519765 | 353..196 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 30523227..30523330 | 198..95 | 520 | 100 | Minus |
| 3R | 32079331 | 3R | 30526243..30526329 | 95..9 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:41:02 has no hits.
FMO07609.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:21 Download gff for
FMO07609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RA | 95..691 | 1..598 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:58 Download gff for
FMO07609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RA | 93..689 | 1..598 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:40 Download gff for
FMO07609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RA | 93..689 | 1..598 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:40 Download gff for
FMO07609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30518330..30518573 | 354..598 | 98 | <- | Minus |
| 3R | 30519608..30519763 | 198..353 | 100 | <- | Minus |
| 3R | 30523228..30523329 | 96..197 | 100 | <- | Minus |
| 3R | 30526243..30526333 | 1..95 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:58 Download gff for
FMO07609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26344052..26344295 | 354..598 | 98 | <- | Minus |
| arm_3R | 26345330..26345485 | 198..353 | 100 | <- | Minus |
| arm_3R | 26348950..26349051 | 96..197 | 100 | <- | Minus |
| arm_3R | 26351965..26352055 | 1..95 | 94 | | Minus |
