FMO07611.5prime Sequence
578 bp (578 high quality bases) assembled on 2008-11-03
> FMO07611.5prime
CAGTCGACATGTCGGATTCGCCCCATGAGGAGCACCGCTTGTGCGGTCTG
GGGAATCACACGCTGAGGTCCCCGTACCGCGTAATCAGAAATCCGCACCT
GCTGAAGTTTGGCCAGCTGATAAACTCGGAGCTGCGGTCTCAGCCACTGT
GCCTCTCGTGCTACACGCAACTGATCCAGCTCTACCGGCTGAAGAACAAC
AATGCGAAGAGACACCTGGCAAATAGACAGGCAGCCAGTGCTATTCTCTC
GAGGAGCAGTAGTGAGAAATCTCATGAGTCCGCGGCTAGTGTGTCCACAA
CACAATCCTCGGAGGAGCAAGAATCAACCACTAGCGCAGCGCCGGCGGCG
GCGGCTCAAAGAGCAGGAAGCCAGTTGGTTGAGTCCAATTCTTCCGACGA
TACACTTTTCTCCGATGACTACGATCCCAGCTCGAATCTGAGTTTGAATG
CCGTGAATGGAACGCGGCTACCGAATGTCCAACCAATTCCGAAAAGGCGC
CAGTTTGTGCATCTAAATCGTGAAGCTATGGCCATTTATCTGGCGGGAAC
TACTGGGGGAGCAAGCTTTCTAGACCAT
FMO07611.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(3)K81-RA | 711 | CG14251-RA | 105..656 | 9..560 | 2760 | 100 | Plus |
| HipHop-RB | 1183 | CG6874-RB | 655..743 | 413..501 | 205 | 82 | Plus |
| HipHop-RA | 1124 | CG6874-RA | 596..684 | 413..501 | 205 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26875956..26876507 | 9..560 | 2760 | 100 | Plus |
| 3L | 28110227 | 3L | 18821825..18821913 | 413..501 | 205 | 82 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:19:23 has no hits.
FMO07611.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:37 Download gff for
FMO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)K81-RA | 1..555 | 9..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:32 Download gff for
FMO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)K81-RA | 97..664 | 1..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:32 Download gff for
FMO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)K81-RA | 97..664 | 1..569 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:32 Download gff for
FMO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26875948..26876515 | 1..569 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:32 Download gff for
FMO07611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22701670..22702237 | 1..569 | 98 | | Plus |
