FMO07613.5prime Sequence
882 bp (880 high quality bases) assembled on 2008-11-03
> FMO07613.5prime
CAGTCGACATGTTCGGAGCGCATCAGAATCTCTCAATTCAGCTGGTGATT
TTTCTCTCCTTAGCCGTCACCATTTGCTTGGGATCCCAAAATGCCACAAG
CTGCGGGCATCGCTGTGGAGGAGGCGACTGTATCCAACTGGACCAGCTGT
GCGATGGGAGCGCCAACTGCTTGGATGGTTCCGATGAGACGGTCGCCATG
TGTGAGAAGGTCTGGTGTCCGGGTTATGCATTTCGCTGCAGCTACGGTGC
GTGCATAGCCAGCACAGCGGTTTGCGATGGCGTCCAGGACTGCGTGGATG
GTTCGGATGAGCAGGGTTGGCTGTGCCGGGCGCAGATGCAGCAGGCTAAC
TGCGACAACTGGGAAATGTACTGCTCCTCTGGCCAATGCATGACCTATTC
CAAATTGTGTGATGGCATCCGTGACTGCCGAGATGGAGACGATGAGCTGG
AGTCCCTTTGCGAGGGCGTTACCATACCAACGACTACAGTCAGTTCAACG
ACAAGTACAACTACGGAAAGTAGTATCCATAGGATAACTCCCACTGTTCC
TGTAACAAGGAAGGCGTCACGACCAAATCCTCTTCAGGAGAACGGGGAGT
GCGTGGTTCCCCAACTGCCAAACGTTATGGTTAAGCACTTCACAGATGCA
ATCCTCACTGTAGGATCAAGGGTAGCCAATGGCACCCGTATCTACTACGA
CTGCCCGGCGGAGCACAGACTGAAGGCGAGAACCAGAACATTTGCCAGGA
CGCATTGTGGGCTAGGAAGTTTCCTTACTGTGAAACACCCCAAGCGTATG
TTTTCAGCTTGGATTATAGTAATATTCTGCTTCCTAATCGTGGTATTGGT
GTTTCTAATTTGGGCGGGTGCGTCGAGAAAAT
FMO07613.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6553-RA | 1145 | CG6553-RA | 27..899 | 9..882 | 4300 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13854975..13855752 | 785..9 | 3840 | 99.9 | Minus |
| 2R | 25286936 | 2R | 13854824..13854918 | 882..786 | 385 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:10:07 has no hits.
FMO07613.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:18 Download gff for
FMO07613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-RA | 1..873 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:48 Download gff for
FMO07613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-RA | 19..899 | 1..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:09 Download gff for
FMO07613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-RA | 19..899 | 1..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:09 Download gff for
FMO07613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13854975..13855760 | 1..785 | 99 | | Minus |
| 2R | 13854824..13854918 | 786..882 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:48 Download gff for
FMO07613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9742329..9742423 | 786..882 | 97 | <- | Minus |
| arm_2R | 9742480..9743265 | 1..785 | 99 | | Minus |
