FMO07614.5prime Sequence
1229 bp (1039 high quality bases) assembled on 2008-11-03
> FMO07614.5prime
CAGTCGACATGGAAGGCAAAAATATTGAATATAATGCGGACGAACTTCAG
GCGCCAGCTTGGCTAAATGCTCAGTTTATCGGTGATATTCTGAGAGAGTA
CGAGCAACTCCCGGATCTTAAAGTAACCGATCTGCAGGTATCACCCGCCA
CTGCCCAGGGAGATCACTATGCCAGCGTTATGTTCCGCACCAAAGTGGAG
TACACAACACCTAAGGGAAAGTTCTTCAAGCCACTGATCATCAAAACTAT
GCCAGAGCAGGAAGGACATAAAAAGGACATGCTGTCCGAATCGCATTTAT
TCGAAACGGAAATCGGAATGTACTGCCATGCCCTTCCAGAGTTCGAAAGG
ATCCTCCGAGAAGCAGGGGACAATACCAAACTGTTTGTGCCCTGCATTTA
TCACAGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCTGGTTCCGC
AGGGGTACACCGTCATCCGCGATAGCCCGCCCTCACTGGGGGATTTGAAA
TTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATGAAAGTCAT
CAATGAGCAACCATACTTCCTAAAGGAATTTCAGTATGGCTTATTCGAAA
TGCCCACAATCGATACTGATCCTTTTATAACAACAGGCATGACAAACTTT
ATTGAAATGCTGGACAAAATGCCGGAACTAAGAAAGTATAAACATCATTT
TGAAAAGATTAAAGATAATTACATGCAACGCCTAGAGGTTGAGATGCATG
AATATCACAAATATCGGCGAAACGATCGGTACTACGTCCTGTGTCACGGT
GACTTCCATCTTCGCAATATGATGTTTAGACACAATAAAGGAGTTGGGAG
CCTACGATGACGTGATGTTAGTCGACTTTCAATTGAGCAATCTGTGCCCC
ATTACAGTGGACTTGACATACTCCGTATATATGCTGATGGAGCCCGGAAC
AGCGCTGGGAAATGGGAGAGACCTTGATCATGAATATTTTCCGGTTTGGT
AGCCCCCCTCAGAAATGATACAAGGGGATATGCCTACCCAAGAGAATGTG
GGAGCAATACAAAATACAGTATTATGATTCTTTCTGATAAGCACCTTTCT
CCCATAATGGTGGCGTTATCTCGCATTGATTTGTAATTGCCTGAGCACCT
CAGATCCAGGCCCGCCGTGAGTCTCTCAACTCTCCCCTCAACGCGCACAC
ATATGTTCTCACGAAGATGTTCTCTTATA
FMO07614.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31104-RA | 1382 | CG31104-RA | 61..1209 | 9..1145 | 5165 | 97.5 | Plus |
| CG31300-RA | 1474 | CG31300-RA | 108..1180 | 39..1100 | 1300 | 75.9 | Plus |
| CG13658-RB | 1334 | CG13658-RB | 165..603 | 156..594 | 605 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25285533..25286081 | 9..557 | 2745 | 100 | Plus |
| 3R | 32079331 | 3R | 25286135..25286591 | 556..1012 | 2050 | 98.5 | Plus |
| 3R | 32079331 | 3R | 25283727..25284142 | 39..454 | 685 | 77.6 | Plus |
| 3R | 32079331 | 3R | 25284305..25284725 | 556..978 | 590 | 77.1 | Plus |
| 3R | 32079331 | 3R | 25287638..25287955 | 156..473 | 555 | 78.3 | Plus |
| 3R | 32079331 | 3R | 25289952..25290750 | 28..826 | 440 | 70.3 | Plus |
| 3R | 32079331 | 3R | 25304368..25304655 | 157..444 | 270 | 72.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:41 has no hits.
FMO07614.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:16 Download gff for
FMO07614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31104-RA | 61..1187 | 9..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:00 Download gff for
FMO07614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31104-RA | 61..1187 | 9..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:27 Download gff for
FMO07614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31104-RA | 61..1187 | 9..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:27 Download gff for
FMO07614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25285533..25286081 | 9..557 | 100 | -> | Plus |
| 3R | 25286137..25286665 | 558..1076 | 96 | -> | Plus |
| 3R | 25286731..25286755 | 1077..1100 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:00 Download gff for
FMO07614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21111255..21111803 | 9..557 | 100 | -> | Plus |
| arm_3R | 21111859..21112387 | 558..1076 | 96 | -> | Plus |
| arm_3R | 21112453..21112477 | 1077..1100 | 96 | == | Plus |
