FMO07616.5prime Sequence
1182 bp (1023 high quality bases) assembled on 2008-11-03
> FMO07616.5prime
CAGTCGACATGACCAATGGCGAATACAACAATTGTTACATGTACGACGTC
AACTATACGGATATACTTGCCCAGGGCAAGGTGATGGCCGATCCCAAGTG
GCCGCAGGTCAAGTGCCGCCACGGCTGGTCATATAACTTCACGGAAATAC
CCTACGCGACGGTGGCCACCGAGCAGAATTGGGTGTGCGATGACGCCGCC
CTGCCCACCTACGCCCAGTCCATATTCTTTCTGGGCGCCATCGTGGGAGG
ACTGCTCTTTGGCTGGGTGGCGGATCGGTTTGGTCGTATTCCCGCCCTGA
TCGGCACCAATATGATGGGTCTCCTGGCCGGCGTGGGCACTGCCTTTGTC
AGCAACTTCTGGGAGTTTGCTATCATGCGATTCTTCGTCGGATTCGCCTT
TGACAACTGCTTCACAATGATGTACATATTGGTTCTCGAGTACGTTGGTC
CCAAGTACCGCACCTTTGTGGCCAATATGTCGATCGCTATCTTCTTCACT
GGAGCCGCCTGCCTTCTTCCCTGGATTGCCTACTTTTTGGCAGATTGGAA
ACTCCTGGCCATCGTGACCTCTGCTCCGCTACTTTTGGCTATATTCACCC
CATTCGTGGTACCCGAATCAGCTCGTTGGTTAGTCTCCCAGGGAAAAGTG
GACAAGGCCGTGGGAATCCTGAAGAAACTTGAGAAGGGCAATGGGCGTCA
GGTGCCCCCTCAGACATATCAAATCTTTACGGACAGCTGTAAGAGGATGC
AGAGCAGAGGCCCAGAATGGCAAATACTCTGTACTGGATCTCTTTAAGTC
ACCAAGATTGCGGCGAACTACTCTGCTGCTTATTGTTATCTGGATGGCCA
TATCCCTAGTCTTCGATGGACATGTGAGGAATGTGGGATCACTGGGTTTG
GACATCTTCTTCACCTTCACCCTGGCTGTTTCACGGAGCTGCCCGCCGAT
ACTTTGCTTACGTGATCCTGATCGTTCGGACGCGTGTGCCTGCAGCTCAT
GGTCTATGATGTCAGCTATGGCACTGTGGTGCCGTGGCATATACTCCGCT
GCTGCATCATGATCGATTCTTTGTAACATACTTATATGTTGCATCCGCGA
GTCTTGCCACTGGGCTAGGGCCAGCATGCTATCGATCATGTATGCAGACC
TAGACCCATTTGGTACTTGCGCAAATTTCAAC
FMO07616.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42269-RE | 2362 | CG42269-RE | 613..1709 | 8..1076 | 4820 | 97.4 | Plus |
| CG10486-RB | 2288 | CG10486-RB | 894..963 | 407..476 | 185 | 84.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6070220..6070753 | 432..962 | 2520 | 99.4 | Plus |
| 3L | 28110227 | 3L | 6069468..6069892 | 8..432 | 2125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:44:50 has no hits.
FMO07616.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:13 Download gff for
FMO07616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42269-RE | 408..1371 | 1..962 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:34 Download gff for
FMO07616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42269-RE | 607..1570 | 1..962 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:40 Download gff for
FMO07616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42269-RE | 607..1570 | 1..962 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:40 Download gff for
FMO07616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6069462..6069892 | 1..432 | 99 | -> | Plus |
| 3L | 6070221..6070753 | 433..962 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:34 Download gff for
FMO07616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6062562..6062992 | 1..432 | 99 | -> | Plus |
| arm_3L | 6063321..6063853 | 433..962 | 99 | == | Plus |
