FMO07623.5prime Sequence
1173 bp (297 high quality bases) assembled on 2008-11-03
> FMO07623.5prime
CAGTCGACATGCTGGATGTTCCACATGAATCTAAGGTGCGCGGCCGCCAT
CGTGCACCGTCCGACTCCCAGGAGTTCCATGAGGTGACCAAACGGGATGC
CCTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCTGGAGACCACTGAGA
AGGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCGCCGATCTG
TTCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTGGACTGGAACAAGAT
TCAAAAGCTGCCTGAGAATGCTGTGATGAACTACTCGAATCTTAAGTCGC
CCAAAAACGAGCAGAATGAGATCCGCAACATGTTGGATAAATTGGTGGTC
ATCAAGCTGAACGGTGGTTTGGGCACCTCAATGGGTTGCCATGGCCCCAA
GAGTGTGATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCTGACCGTGC
ACCTGATCGAGCATCTCAACAAGACCTACGATGCCAATGTTCCGCTGGTA
CTGATGAACTCCTTTAACGCCGACAAGGATACCGAGAAGATCGTGCGCAA
GTACAAAGGATTCCGTGTGCTCATCCACACCTTCAACCAGAGCTGCTTCC
CGCGCATTAATCTGGAGCACTACCTGCCGGTGGCCCAAAACTTTGATGTC
GAAAACGATATGTAATCCTGGTATCTATCTGGACACTGTGACTTCTACTA
TACCTTCCGCAACTCTGGCCTGCTGAATAGTTTGTCGAGGATGCCGCGAG
TATTGTTTCTTGTCTTACATCGATTACCTGGGCGCTACCGTCCATCTGAA
CAACCTCAATTAGCTGGTGGGCGAGGAGCGGGCCGCTACTCATTGTAGTT
TGTCATGGAGGCACCGATATACCCGTGCTGACGTTAGCGTGTACTCTCAG
TCAAATGGAAAACATTTGCGTGTGTTGTGATTGCTCATGTGCAGCAGAGC
AGTTGATGACTTGAAGCTCTAACACCTTCAGTCTTTACAGCTACACTTAT
GGACAACTTGCCACCTTTGATCACGTTTGCGGAAGCGTACGTTCAAATTG
TAGCTATCGTGACAAACATGCAGCTGGTAAACGCAACCGGTCATTCACTG
AGACTGCTTGAGTGCGCATAAGGCTTTGTAGCCTGTGTGGCATCATGGTA
CGCGTATCAGATATCTATGACCC
FMO07623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RC | 2099 | CG4347-RC | 295..1428 | 9..1116 | 3750 | 90.2 | Plus |
| UGP-RD | 2093 | CG4347-RD | 295..1422 | 9..1116 | 3650 | 89.7 | Plus |
| UGP-RA | 2102 | CG4347-RA | 302..1408 | 36..1116 | 3630 | 90.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9352887..9353230 | 662..319 | 1510 | 95.9 | Minus |
| 3L | 28110227 | 3L | 9353888..9354076 | 222..34 | 885 | 97.9 | Minus |
| 3L | 28110227 | 3L | 9352604..9352827 | 886..668 | 570 | 88.8 | Minus |
| 3L | 28110227 | 3L | 9353738..9353831 | 314..221 | 440 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:32:33 has no hits.
FMO07623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:19 Download gff for
FMO07623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 204..1130 | 1..920 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:22 Download gff for
FMO07623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 288..1214 | 1..920 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:40 Download gff for
FMO07623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RC | 288..1214 | 1..920 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:40 Download gff for
FMO07623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9352882..9353228 | 321..667 | 95 | <- | Minus |
| 3L | 9353729..9353829 | 223..320 | 94 | <- | Minus |
| 3L | 9353888..9354074 | 36..222 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:22 Download gff for
FMO07623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9345982..9346328 | 321..667 | 95 | <- | Minus |
| arm_3L | 9346829..9346929 | 223..320 | 94 | <- | Minus |
| arm_3L | 9346988..9347174 | 36..222 | 97 | <- | Minus |
