FMO07626.5prime Sequence
1197 bp (1041 high quality bases) assembled on 2008-11-03
> FMO07626.5prime
CAGTCGACATGGGTTCCTCGTCGTCGGGAAAGAAACACAAGAAGGACAAG
AAGAACCGTCATCGCTCGCGATCGTCGGAGCGACCGCGGCGCGTCACAGA
GGACGAGGATGTCACACTGGATCTCACCGACGACTCCTCGTCGCGGCACA
GACACCACAAGCACAAGAAGCACAAGGAGCACCGCCACAAGCACCACAAG
CAAAAGGAGCGCGAGCGCGCGAACGAGGTCATCTCCCTAGAGGAATCGGA
CTCGGATAGTTTCTCCTTTTTTTCAGGTTCCGACTGCGTGGAGGTGCCGG
TACAGGCGCAGGTGCAGGCGCAGGCCAAGTTGAGGGACGCCAGAGAATCG
TCCAATCGTGACAAGGAGCGGGATTCTGGACGCGATCGTGAACTCCTAAG
AGAAAGGGAGCGAGAACGAGATCGTGAGCGGGAGAGGGATCGGGATAGGG
AAAAGGAGCGCGAACGGGAGCGTGAGAAGGAGCGTCTCAGGGAGCGGGAG
GAGCGCGAGAGAGAGCGTGAGAAGGAACGTATCAGAGAACGCGAGAAAGA
ACGCCTTAGGGAGCGCGAGAGGGAGCGGGAACGCGAACGTGTACGGGAGC
TCACAGCTCCTCCACCACCCCAAATCTCCAAGCATGCCGAATATGAGTCT
AGGCGAGAGCGTGAGATCGAACGGGAACGGGACGCCCGCAAGCGATCTGG
CAGAGAACGTGAAAGGGAACGTAATAGGGAACGGTCCCGATCCCAGTCGC
CAGCATCGTCGTCGCGTAAACCAGCCACTAAGGAACGCGAACCATCGTCT
CGTTCCTTCTCGCCAATACCAGAAAACGGAGCCGGCGATGTCCTGTCCAT
TACGGAGACGAACAAACTTCGCGCCAAGCTGGGTCTGAAGCCACTCGAAG
TTGATAGTGGTCCCAGCAAGGCAGGCCCTCCGCCTGAGCAGTAGTCAAGG
CGAGATCAAAACCCCATGGCGAGGCCGATCCCTCCTCGTACAGATGAGTG
GGGCGAGTTCTTGCACAGCGGCGACATCTAAAGGAGAAAGGAGCAGAGAG
CTGCGCGAAGAAACTCACAGGCAGAGACGATTCTTAGAGGAGCGCCTGCT
CGCATCAAACCTGGGAGTCTGATGAGACCTGACATGGTCATGGGTGAAGA
CACGCGGTGTCACGACCCTAGAAAGCCATGTGCAAGGCCAAAAGAGT
FMO07626.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6686-RA | 3187 | CG6686-RA | 95..1237 | 9..1126 | 5095 | 97.5 | Plus |
| CG6686-RC | 3192 | CG6686-RC | 95..1242 | 9..1126 | 4925 | 96.5 | Plus |
| CG6686-RB | 3169 | CG6686-RB | 95..1219 | 9..1126 | 4815 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11986641..11987394 | 1017..270 | 3530 | 98.8 | Minus |
| 2L | 23513712 | 2L | 11987694..11987945 | 260..9 | 1260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:37:16 has no hits.
FMO07626.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:07 Download gff for
FMO07626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6686-RA | 91..1250 | 9..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:58 Download gff for
FMO07626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6686-RA | 95..1254 | 9..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:14 Download gff for
FMO07626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6686-RA | 95..1254 | 9..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:14 Download gff for
FMO07626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11986496..11987387 | 277..1139 | 96 | <- | Minus |
| 2L | 11987495..11987512 | 259..276 | 100 | <- | Minus |
| 2L | 11987696..11987945 | 9..258 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:58 Download gff for
FMO07626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11986496..11987387 | 277..1139 | 96 | <- | Minus |
| arm_2L | 11987495..11987512 | 259..276 | 100 | <- | Minus |
| arm_2L | 11987696..11987945 | 9..258 | 100 | | Minus |
