FMO07627.5prime Sequence
1213 bp (1052 high quality bases) assembled on 2008-11-03
> FMO07627.5prime
CAGTCGACATGGCTGCTGTCAATCTCCAGGCTTCGTGCTCCTCCGGGCTC
GCCTCTGAGGATGACGCCAATGTGGGCAGCCAGATAGGCGCGGCGGAGCG
TTTGGAACGACCTCCAAGGCGGCAACAGCAGCGGAACAACTACGGCTCCA
GCAATCAGGATCAACCGGATGCTGCCATACTTGCTGTGCCCAATGTGGTG
ATGCGTGAACCTTGTGGCTCGCGCCCTTCAAGACTGACCGGTGGAGGAGG
CGGCAGTGGTGGTCCGCCCACAAATGAAATGGAGGAAGAGCAGGGCCTGA
AATACGGGGCCCAGCATGTGATCAAGTTATTCGTCCCCGTCTCCCTTTGC
ATGCTGGTAGTGGTGGCTACCATCAACTCCATCAGCTTCTACAACAGCAC
GGATGTCTATCTCCTCTACACACCTTTCCATGAACAATCGCCCGAGCCTA
GTGTTAAGTTCTGGAGTGCCTTGGCGAACTCCCTGATCCTGATGAGCGTG
GTGGTGGTGATGACCTTTTTGCTGATTGTTTTGTACAAGAAGCGTTGCTA
TCGCATCATTCACGGCTGGCTGATTCTCTCCTCCTTCATGTTGTTGTTCA
TTTTTACGTACTTATATTTGGAAGAGCTTCTTCGCGCCTATAACATACCG
ATGGACTACCCTACTGCACTACTGATTATGTGGAACTTTGGAGTGGTCGG
AATGATGTCCATCCATTGGCAGGGACCTCTGCGGTTGCAGCAAGGATATC
TCATTTTCGTGGCAGCCTTGATGGCCTTGGTGTTCATTAAATACCTGCCT
GAATGGACTGCCTGGGCTGTATTGGCTGCCATTTCTATTTGGGATCTTAT
TGCTGTCCTTTCGCCAAGAGGACCCCTCCGCATTCTGGTGAAACGGCTCA
AGAGCGAAATGAGCAAATCTTCCCCGCTCTGATTTATTCATCCACTGTCG
TTTACGCACTTGTAAACACTGTTACGCCGCAGCAATCGCAGGCCACAAGC
TTCTCCTCGCCGTCGTCCAGCAACTCCACCACAACCACGAAGGGCCACGC
AAACTCGCTGGCTCCCCAGAGGCAGCAGGGCTAATGCCAACGCACAGTAA
CCTCCCATCCTCGACAGAAATCACGGGATGAACGCAGGGTTACTGGCAAC
TGAGGTATGCACTTGGACTTAAAGCCATTGCGCGCGAAAGCCTGTAAGCC
TCGTGCCGTTTTC
FMO07627.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Psn-RE | 1891 | CG18803-RE | 159..1326 | 9..1170 | 5375 | 98.1 | Plus |
Psn-RA | 2048 | CG18803-RA | 316..1483 | 9..1170 | 5375 | 98.1 | Plus |
Psn-RD | 1879 | CG18803-RD | 189..1336 | 9..1153 | 5350 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20433072..20433310 | 174..412 | 1195 | 100 | Plus |
3L | 28110227 | 3L | 20433641..20433861 | 623..843 | 1105 | 100 | Plus |
3L | 28110227 | 3L | 20433378..20433587 | 413..622 | 1050 | 100 | Plus |
3L | 28110227 | 3L | 20432842..20433007 | 9..174 | 830 | 100 | Plus |
3L | 28110227 | 3L | 20434082..20434300 | 937..1153 | 550 | 89.6 | Plus |
3L | 28110227 | 3L | 20433933..20434032 | 843..941 | 435 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:44:25 has no hits.
FMO07627.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:06 Download gff for
FMO07627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psn-RA | 311..1483 | 1..1170 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:26 Download gff for
FMO07627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psn-RA | 311..1483 | 1..1170 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:25 Download gff for
FMO07627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Psn-RA | 311..1483 | 1..1170 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:25 Download gff for
FMO07627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20434087..20434320 | 942..1170 | 91 | | Plus |
3L | 20432837..20433006 | 1..173 | 97 | -> | Plus |
3L | 20433072..20433310 | 174..412 | 100 | -> | Plus |
3L | 20433378..20433587 | 413..622 | 100 | -> | Plus |
3L | 20433641..20433861 | 623..843 | 100 | -> | Plus |
3L | 20433934..20434032 | 844..941 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:26 Download gff for
FMO07627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20427187..20427420 | 942..1170 | 91 | | Plus |
arm_3L | 20425937..20426106 | 1..173 | 97 | -> | Plus |
arm_3L | 20426172..20426410 | 174..412 | 100 | -> | Plus |
arm_3L | 20426478..20426687 | 413..622 | 100 | -> | Plus |
arm_3L | 20426741..20426961 | 623..843 | 100 | -> | Plus |
arm_3L | 20427034..20427132 | 844..941 | 97 | -> | Plus |