FMO07634.5prime Sequence
1196 bp (1005 high quality bases) assembled on 2008-11-03
> FMO07634.5prime
CAGTCGACATGTCTTTTATGAACCCCGTGGATATGGTGGATGAGGACGCC
GCCGACCTGCAGTTTCCCAAAGTTGAGCCACTGGGGCCACAGGTTAAGCG
GTTCATCCATGCACATCAGAATGAACACACCAGGAACTCCATGGTTTTGT
ATAATCCGCACACGTTGCACAGGTACTTGGAGGAGATGGAGGAAAAGACG
CGGGACCAGAATAGCAGTGTTCCATCGGCTACAAAGGATGCCAATCGATG
TGCCACATGTCGCTGCAGTCTCACAGAGCCGTACATTAAGTGCTCCGAGT
GCCTCGACACCCTGCTCTGCCTGCAATGTTTCTCACGTGGAAAGGAGGCC
TTTTCTCACCGCAATAACCACGCTTACATCATAGTCCGCGACAACATACA
GGTGTTCGCCGATGAGCCACACTGGACGGCACGGGACGAGCGCATACTGC
TGAAAACACTTCGCACCCACGGCTATGGCAACTGGGAGGCGGTCTCCCAG
GCTCTGGACCAGCGCCACGAACCCGCAGAAGTGCGACGTCACTACCACGA
TTGCTACTTTGGCGGGATATTCGAGCGGCTCCTTAATCTGAAGCATGCGA
GGGACAGCTATGTGCCCGAACGAATGCCGTATGTCTTCAAAATGCGCAGC
TTGGATCCACCACGTCATGACGACATCGCCTCCATGCAGTTCAGACTGAG
CGCAGGCTACCGCTGTGCAAGAGGAGACTTCGATACTCCGTACGACACCT
CAGCAGAGAGTCTGCTATCTATTATGGTGGATCATAGGGGCAGGGATGAC
GACAACGAGGCGTCTGAGAGTGAGTTTGAGCGCGAAGTGACAGAGGATTT
GCAACTCGGACTAGTTCGGGCATACACAATCGCCTCAGAGAGCGCCAGCG
TCGTTACAGATAATGAGCAACACGGTCTCATAATGCCCAATCGCACCGTC
AGCTGGATTTCCAAGTACGTGCACGCCTTGGCAGCGATGCAGTTGCATGC
GTTTCTTGGGCCTCATGCAATCTGTCCTGACCCATTAAGTCGATATGCTG
TGGAGTCTCTTGCGTTATTATCGGACTGCTAGCCAGCTGCCAAGCCTATA
CGATTGGCGGAAACGCGTCCACTCTTCCGACTAACTATGCCGCTGGACAA
GACGCTCACAGGTACCGAATACACCAGCGGTGAACTACTTAGTAGC
FMO07634.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2a-RG | 2158 | CG43663-RG | 108..1214 | 9..1104 | 5050 | 97.9 | Plus |
| Ada2a-RC | 2340 | CG43663-RC | 108..1214 | 9..1104 | 5050 | 97.9 | Plus |
| Ada2a-RA | 2400 | CG43663-RA | 108..1214 | 9..1104 | 5050 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18254375..18255193 | 888..71 | 3940 | 99 | Minus |
| 3R | 32079331 | 3R | 18254124..18254319 | 1074..886 | 520 | 94.9 | Minus |
| 3R | 32079331 | 3R | 18255317..18255380 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:32:08 has no hits.
FMO07634.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:15:12 Download gff for
FMO07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RC | 76..1197 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:14 Download gff for
FMO07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RA | 99..1220 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:29 Download gff for
FMO07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RA | 99..1220 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:29 Download gff for
FMO07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18255317..18255386 | 1..72 | 94 | | Minus |
| 3R | 18254085..18254316 | 889..1110 | 92 | <- | Minus |
| 3R | 18254375..18255191 | 73..888 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:14 Download gff for
FMO07634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14079807..14080038 | 889..1110 | 92 | <- | Minus |
| arm_3R | 14080097..14080913 | 73..888 | 99 | <- | Minus |
| arm_3R | 14081039..14081108 | 1..72 | 94 | | Minus |
