FMO07638.5prime Sequence
1187 bp (1068 high quality bases) assembled on 2008-11-03
> FMO07638.5prime
CAGTCGACATGCCCGATAACAGCAATAAATTTAGCGCCTCCAGCGATGTC
CGCATTCCGGCCTGGATCAATGAGGCCTACTTCAAGCGACTGCTCAAGCG
GGAGTTTCGGGAGTTCCGGCGCATCCTCAACCTCTCGATCATTCCAGCCA
CGCCGCCCGGAGAAACCTATACATCGCTGCTGATGCGCATCGTCATCGAC
ATCGAGTTGAAAGATGGATTCTCACAGCAGAAGTCCTACATAGTAAAGAC
CATGCTGGACGACGCCCAGGGAAATGGTGGATTCGTGAATACCCTCAACA
TTTTTCCAAAGGAGAAGATGATGTACGAAACGATTATACCTAATTTGGAA
CAGCTTTACGAAGAAGCTGGGCTGAGTGTAAAGTTTGCACCAAAGTGCCA
CCATGCGGAGGATATCAAAGGAAGGATCTGCCTGGTTCAGGAGGATTTGC
AAACGAAAAAGTACCGAAATATAAATCGCCTCAAGGGCTTCGACATGGCC
CACATGCATCGAGTGCTAGAAAAGCTGGCGGAATTCCATGCAGCAGGTGC
CGTTTGGCGTCAGCGAAAAGGACCGTTTCCCGATGATTTTCAGAGGATTT
ACCTACCCGCCAACTATCAGAAATCGAAATCGTATCAGGCGAGGCTCCAG
AGCTATAAAACTGCAATAGCCAGTTGGGGTCTGGCCGATCACGAACAGTA
TCCCACGGCCGATCAATTTGTGCAATCCTACGCCAGCTGCTTTAACAACA
ATCCGCAGGAGTTTAAAGTTCTAAATCACGGTGATTTTTGGTCCAGCAAC
ATAATGCTAAGCTATACTCAAACTGGTGATATCAACCAGGTGCGTTTCGT
GGACTTCCAACTGTGCAAGTGGGGTAGTCCGGCTCAGATCTTTGGGAACT
CATCATATGTTCGGCACGGCATAGTATACGAATACAATACTTTGACTACT
TCATCAGGATATACCACACACACCTAGTGCGCTGCCTAAACATCCTAAAA
TACAGCGACGATACCAATGCTAGGAGCTGCATTATGAGCATGATCAGTAT
TGGATTTGGGCTACTTTACCACTTCACCCACCTTGTGTTCATTTGCTGCA
CGATCGAGCTAGCCTTGGTGAGCTAACCGCGACCGAAGGAGAGAATCGCC
TTCGCGGTTCAAGGGGTACACAAAATTCACCATCTCC
FMO07638.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31102-RA | 1744 | CG31102-RA | 293..1392 | 8..1099 | 5185 | 98.6 | Plus |
| CG31102-RB | 1756 | CG31102-RB | 293..1404 | 8..1099 | 5055 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25294348..25294837 | 701..212 | 2435 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25293964..25294271 | 1008..702 | 1475 | 99.4 | Minus |
| 3R | 32079331 | 3R | 25295097..25295302 | 213..8 | 1030 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 5474..5524 | 1093..1042 | 113 | 71.2 | Minus |
FMO07638.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:44 Download gff for
FMO07638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31102-RA | 283..1393 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:02 Download gff for
FMO07638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31102-RA | 287..1397 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:05 Download gff for
FMO07638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31102-RA | 287..1397 | 1..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:05 Download gff for
FMO07638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25293908..25294271 | 702..1059 | 96 | <- | Minus |
| 3R | 25294348..25294835 | 214..701 | 99 | <- | Minus |
| 3R | 25295097..25295308 | 1..213 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:02 Download gff for
FMO07638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21119630..21119993 | 702..1059 | 96 | <- | Minus |
| arm_3R | 21120070..21120557 | 214..701 | 99 | <- | Minus |
| arm_3R | 21120819..21121030 | 1..213 | 99 | | Minus |
