FMO07641.5prime Sequence
1190 bp (1011 high quality bases) assembled on 2008-11-03
> FMO07641.5prime
CAGTCGACATGCACGCGCTTCAGGAAGGCGCCACCGTGCTGCACCACCAG
CAGCCACCGCCACCCACTTCTGGCGAGGATCACCTGCTCACCGCTGATAG
TTTCTTTTATGCACGCAGCAATCCCATGGAGAACGCGGCCGCAGCAGCCG
CCGCCGCAGCAGCGGGCTTGATTGATCCGCACCACAATCGCGATCTCCAC
CAGGCGCTGGTGGCCTCGATAGCCAATAATAGTGTGGCCGCCATCGGCGG
TGGCCTGACCACAGCGGCAGTCTTGAAGAGTGCCGCTCAGCAGTCCCAGC
AGGCGGTGCAACAGAACCAGAACGCGGTAGTGGTGACACCGGGACTGGAA
CAGCCCAAACAGGAACCAGCCCAACAGGCGGCACTGGCGCTGCTCAAGGA
GAATGTAAACGCCTCCGCCGGAGCGGGACAGAACAACGGTCAGGCGGCCA
TGGGTGGCAGCAACAAGAGCGGCTCCTCTGGCAGATCCACGCCCAGCCTG
AGCGGAGGCAGTGGCTCCGATCCGGCACCCGGCAAACTCTTTGTCGGCGG
TCTCAGCTGGCAGACGTCGTCTGACAAGCTCAAGGAATACTTCAACATGT
TCGGCACCGTCACCGATGTGCTCATCATGAAGGATCCCGTCACCCAGCGC
AGTCGCGGCTTTGGTTTCATCACATTCCAAGAACCCTGCACCGTGGAGAA
GGTTCTCAAGGTGCCCATTCACACACTCGATGGCAAGAAGATCGATCCCA
AGCATGCCACCCCAAAGAATCGACCTCGTCAGGCCAACAAGACCAAGAAG
ATCTTCGTGGGCGGCGTCTCACAGGATACTTCGGCCGAGGAGGTTAAGGC
TTACTTCAGCCAGTTCGGACCCGTCGAGGAGACGGTTATGTTGATGGACC
AGCAGAACAAAGCGCCACCGTGGCTTCGGATTTTGTCACCTTTGAGAATG
AGATGTGGTCGATCGCGTATGTGAGATTCACTTCACACCATTCAGAACAG
GAGTCGGTGCAGATCACAGCCCAGGAAGCAGTCACACGCTGCTCAGCTTC
TCCAAAGCGCATTATGTTGGGCACTGCGTTCAGCTGACAAGCTCCTGCAG
CTAATTGAGCATGTGCGCTGGCCCATTGACATGCATGTCTCAATCCACAG
TTACTGAATTCCCGCAGCAACCGTGTCGCGCAGAGAGGAG
FMO07641.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msi-RA | 3984 | CG5099-RA | 490..1565 | 9..1074 | 5010 | 98.3 | Plus |
| msi-RD | 2801 | CG5099-RD | 700..1667 | 117..1074 | 4470 | 98.1 | Plus |
| msi-RF | 10175 | CG5099-RF | 788..1754 | 118..1074 | 4465 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25594964..25595602 | 9..647 | 3195 | 100 | Plus |
| 3R | 32079331 | 3R | 25599504..25599943 | 645..1074 | 1560 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:06 has no hits.
FMO07641.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:40 Download gff for
FMO07641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RA | 446..1527 | 1..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:34 Download gff for
FMO07641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RA | 484..1565 | 1..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:05 Download gff for
FMO07641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RA | 484..1565 | 1..1074 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:05 Download gff for
FMO07641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25594958..25595602 | 1..647 | 99 | -> | Plus |
| 3R | 25599507..25599943 | 648..1074 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:34 Download gff for
FMO07641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21420680..21421324 | 1..647 | 99 | -> | Plus |
| arm_3R | 21425229..21425665 | 648..1074 | 95 | | Plus |
