FMO07642.5prime Sequence
1238 bp (1016 high quality bases) assembled on 2008-11-03
> FMO07642.5prime
CAGTCGACATGCCTGGCTGCTGTGGATGCTGCTCAGCGCTCAGGCCGCGC
TACAAGCGCTTGGTCGATAACATCTTCCCGGTTAACCCTGAGGACGGGCT
GGTCAAGTCGAACATGGAGAAGCTGACCTTCTACTCGCTGAGCTCGCCGG
ACAAGCTGGACCGGATTGGGGAGTACCTGTACCAAAAGGCCACCAAGGAT
ATTAACCGAAAGCGCTATAAACTAGCCGAAATTGCCATGGAGGCCATGGA
CCTGCTTCTGCAGGCTTGTCATGCCCAGACCACACTCAACTTGTTTGTTG
AGTCCTTCCTGCGGATGGTGCAAAAGCTTCTGGAGGACTCGAACCCCAAC
CTTAAGATAATGGCCACCAATTCGTTTGTGAAGTTCGCCAACATCAACGA
GGACACACCATCTTACCATCGACGATACGACTTCTTCATCTCGAAGTTCT
CTTCGATGTGCCACAGCGATGCGGCTAGCATGCGTGACAGTCTGCGTCTG
GCGGGAATCAAGGGATTGCAGGGCGTCATCCGGAAAACAGTGTCCGACGA
TCTTGTGGAGAACATCTGGGAGGCGGAGCACATGGAAAAGATTGTGCCCT
CGCTGCTATTCAATATGCAGTCCGGGGATCTAACGCCCGTAGAGGACGCC
ACCAATGTGACGCCACCGGCCTTGGCCGAGGAAGTTCTCCGTGAGCTGGT
GGGACGCGCCTCCTTCGGACACATTCGCAGTGTACTAAAGCCGCTGCTGA
CCCACTTGGACCGACATGAGTTGTGGGTTCCCAACACATTTGCCATTCAC
ACATTCCGCATCGTGATGATCTCCATACAGCCACATTACTCGTATACCGT
TGTGGAGACGCTGATGCAGCATCTGGAAAACAACTTCAGTCCTCGCCGAA
AACGCGCACTTCGCTCGCTTGTCGTTCTGTCGAAATTATTAGCTATTGCA
GCGGGAAGAAAGTGGTCGGTCCCTCGGCCCTGGACATCATCAACAACCTG
CTGACCCACCTGCGGACGAGTTGTGAGCACTACCAGCAAAATAACACCAG
AGGAGTCACATATCAGGAGGCGCCTGATCACGACTAGGCGAATTTGCAAC
ATCATTCCCGACTATCAAAGATCGAGATCATGCGGTCCATCCTGAACCCG
GTGCCAAACCTGTCAAAGACAAGGGAAATCATGCTGCGAACCTCTCGCTT
ATAACACCTGCTTAAAGGGTGTGCAATCACATACACGA
FMO07642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stmA-RA | 2738 | CG8739-RA | 129..1290 | 9..1169 | 5290 | 97.7 | Plus |
| stmA-RB | 3116 | CG8739-RB | 514..1668 | 16..1169 | 5255 | 97.7 | Plus |
| stmA-RD | 2780 | CG8739-RD | 129..741 | 9..621 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8731194..8731612 | 1169..752 | 1275 | 92.7 | Minus |
| 2R | 25286936 | 2R | 8732160..8732406 | 620..374 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 8732676..8732881 | 220..15 | 1030 | 100 | Minus |
| 2R | 25286936 | 2R | 8732465..8732618 | 374..221 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 8731681..8731813 | 751..619 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:47 has no hits.
FMO07642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:38 Download gff for
FMO07642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stmA-RA | 177..1332 | 1..1156 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:10 Download gff for
FMO07642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stmA-RA | 122..1277 | 1..1156 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:42 Download gff for
FMO07642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stmA-RA | 122..1277 | 1..1156 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:42 Download gff for
FMO07642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8732465..8732618 | 221..374 | 100 | <- | Minus |
| 2R | 8732676..8732881 | 15..220 | 100 | | Minus |
| 2R | 8732160..8732405 | 375..620 | 100 | <- | Minus |
| 2R | 8731207..8731612 | 752..1156 | 93 | <- | Minus |
| 2R | 8731681..8731811 | 621..751 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:10 Download gff for
FMO07642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4618712..4619117 | 752..1156 | 93 | <- | Minus |
| arm_2R | 4619186..4619316 | 621..751 | 100 | <- | Minus |
| arm_2R | 4619665..4619910 | 375..620 | 100 | <- | Minus |
| arm_2R | 4619970..4620123 | 221..374 | 100 | <- | Minus |
| arm_2R | 4620181..4620386 | 15..220 | 100 | | Minus |
