FMO07644.5prime Sequence
335 bp (166 high quality bases) assembled on 2008-11-03
> FMO07644.5prime
GGTCGCCAAGCTGATGTGTGCTACCCGGATTTCGCTAGGGAGGCCATCAC
AAAAGCTCTCCATGATGCGGGCATCAAGTACGATGAATTGCATCAGGCGG
TGGCCGGCTACGTTTATGGAGACTCCACCTGCGGACAGCGGGCCATCTAC
GAGGTCGGAATGACCGGCATTCCGGTCTATAACGTCAACAACAACTGCTC
CACGGGATCCATTGCTTTGTATTTGGCCAAGCATATCGTGGAGAGCGGAA
ACGCAGATTGCGTCCTGGCTTTGGGATTTGAAAAGATGGTGCGTGTATCC
CTGTCCTCCAAGTTCTTTGATCGCGCCAATCCCAT
FMO07644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ScpX-RA | 1883 | CG17320-RA | 171..505 | 1..335 | 1540 | 97.3 | Plus |
| CG17597-RB | 1758 | CG17597-RB | 531..865 | 1..335 | 1150 | 89.6 | Plus |
| CG17597-RA | 1354 | CG17597-RA | 127..461 | 1..335 | 1150 | 89.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18831735..18832046 | 1..312 | 1440 | 97.4 | Plus |
| 2L | 23513712 | 2L | 18830143..18830448 | 306..1 | 1065 | 89.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:54:58 has no hits.
FMO07644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:35 Download gff for
FMO07644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ScpX-RA | 215..549 | 1..335 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:49 Download gff for
FMO07644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ScpX-RA | 171..505 | 1..335 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:10 Download gff for
FMO07644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ScpX-RA | 171..505 | 1..335 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:10 Download gff for
FMO07644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18831735..18832046 | 1..312 | 97 | -> | Plus |
| 2L | 18832106..18832128 | 313..335 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:49 Download gff for
FMO07644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18831735..18832046 | 1..312 | 97 | -> | Plus |
| arm_2L | 18832106..18832128 | 313..335 | 95 | | Plus |
