FMO07645.5prime Sequence
1012 bp (1012 high quality bases) assembled on 2008-11-03
> FMO07645.5prime
CAGTCGACATGGGACAGAAAGTTTCGCGCACCGACTTCGAGTGGGTGTAC
ACGGAGGAGCCGCACGCCTCGCGGCGCAAGATCATACTGGAGAAGTACCC
GCAGATCAAGAAGCTCTTTGGCCACGACCCGAATTTCAAGTGGGTGGCCG
GCGCAATGGTGCTCACACAGATCCTGGCGCTGTTCGTCGTGAAGGACCTG
TCGTGGTCGTGGCTCATCGTGGCCGCCTATTGCTTCGGCGGCATCATCAA
CCACTCGTTGATGCTGGCCGTTCACGAGATCTCGCACAACCTGGCCTTTG
GACACAGCAGACCTATGCACAACCGGATCTTGGGCTTCATCTGCAACCTG
CCCATCGGGTTGCCCATGAGCATTTCCTTCAAAAAGTACCATCTGGAACA
TCACCGTTACCAAGGTGATGAGGCAATTGACACTGACATACCCACACTGC
TGGAGGCGCGCCTGTTTGACACCACATTTGGAAAATTTCTGTGGGTGTGC
CTGCAGCCTTTTTTTTACATTTTCCGTCCACTGATTATTAACCCGAAGCC
ACCTACACGCCTGGAGATTATTAACACCGTGGTGCAGCTAACTTTCAACG
CCCTGATCGTTTACTTTCTGGGCTGGAAGCCACTGGCCTATCTGTTGATC
GGCAGTATTCTAGCAATGGGACTGCACCCGGTGGCCGGACACTTTATCTC
GGAGCACTACATGTTCGCCAAGGGCTTTGAGACGTACTCCTACTACGGTC
CGCTCAACTGGATCACCTTCAATGTGGGCTACCACAACGAGCATCACGAC
TTTCCGGCGGTGCCCGGCTCCAGGCTGCCAGAGGTTAAGCGCATCGCTAA
AGAATTCTACGACACATGCAACAGCACACCAGCTGGACCCGGGTTCTGTA
CGACTTCATCATGGACCCAGCAGTGGGACTTACGCACGCGTGAAGCGACG
CCAGCGCGGCCTGGCCTCCGCAAGCTTTCAGACCATTCGTTTGGCGCGCG
GCCCAGGTAAGT
FMO07645.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ifc-RA | 1784 | CG9078-RA | 148..1110 | 9..969 | 4735 | 99.6 | Plus |
| ifc-RB | 1656 | CG9078-RB | 418..982 | 407..969 | 2745 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5987615..5988180 | 406..969 | 2700 | 99.3 | Plus |
| 2L | 23513712 | 2L | 5986495..5986896 | 9..410 | 1995 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:47 has no hits.
FMO07645.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:33 Download gff for
FMO07645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ifc-RA | 164..1145 | 1..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:28 Download gff for
FMO07645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ifc-RA | 140..1121 | 1..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:55 Download gff for
FMO07645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ifc-RA | 140..1121 | 1..982 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:55 Download gff for
FMO07645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5986487..5986892 | 1..406 | 99 | -> | Plus |
| 2L | 5987616..5988191 | 407..982 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:28 Download gff for
FMO07645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5986487..5986892 | 1..406 | 99 | -> | Plus |
| arm_2L | 5987616..5988191 | 407..982 | 98 | | Plus |
