FMO07646.5prime Sequence
1220 bp (1038 high quality bases) assembled on 2008-11-03
> FMO07646.5prime
CAGTCGACATGCAATGTTCTAGCTCTCGGCCAGTCGGAGGTAAAGCAGCC
GGTGGAGCAGAAGCAGGAGGGGCAGGAGCAACAGGCCAGATGACTGTGAC
CACCATGGAGGCACAGGTCAAGGCAGCACACCATCATCATCTACACCATC
CCACGGGCGGAGGGGCCCAGCACAAGGTGGAGGAGGAGGAGCCGGATCCT
GTTGAGGACGAGATGACCGTACTGCTGGCCAATAAGAACTTTCACTATGA
CGTCGCCTCCGATCTGGACGACGACGCTTTTGTGGAGCTCAAAGAAGACA
CCGCCCAAGCGGATGATGCGGGCGCGGGCGTTGGCTTCTACAATCCGGAT
GAACTGCTGCTCGATGACCAGCCACATCCGCAAGTCACGTGGCTGGACGA
CGACGAGATCGAGACGCTCGATCGCGTGACGCTGGACATGGGTAATATGT
TCTTCAATCGCGTCGACAGCCAGGACATCATCTATCAGCAGAAAAAGAAG
AGCATTAAGATGGTGGGCAAGTACATAATGGGCGATGTTCTCGGCGAGGG
ATCGTACGGCAAGGTGAAGGAGGCCATGAACTCGGAGAACCTGTGCCGCC
TGGCCGTCAAGATCCTGACTAAGCGGAAGTTGCGCCGGATTCCCAACGGC
GAACAGAACGTAACGCGCGAGATCGCCTTGCTGAAGCAGCTGAAGCATCG
ACATGTCGTGGAGCTGGTCGATGTTTTGTACAACGAGGAGAAGCAGAAAA
TGTACTTGGTCATGGAGTACTGTGTCGGCGGGCTGCAGGAGATGATTGAC
TATCAGCCAGACAAGCGGGATGCCGCTGTTTCAGGCGCACGGTTACTTCA
AACAGCTAGTCGACGGCCTGGAGTACTTGCACAGCTGCCGGGTCATCCAC
AAGGATATCAAGCCAGGCACCTGCTGCTCCTCCCTGGATCAAACGCTGAA
GATATCCGACTTCGGTGGTGGCGGAGCACTGGATCTGTTCGCACCTGACG
ACACATGCACGACGGGCAGTTCTCGGCCTTCTAGCCACCTGAGATGCCAA
CGGACACGAGACGTTCGCCGGCTTTCAGGTGACATCTGTTCAACGGAGTG
ACTTCTCTACATTTGGCCCTGAAGTTCCTCAGGCGACTAAATTCTTCCGA
CGCTGAACATCGGCTAGGTCAGTGAAGTCCCGCTGGCCTTACAAGTAGAC
ACGGCAACATTGGTCCACAT
FMO07646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lkb1-RJ | 2487 | CG9374-RJ | 351..1466 | 9..1118 | 5155 | 98.1 | Plus |
| lkb1-RD | 2422 | CG9374-RD | 345..1460 | 9..1118 | 5155 | 98.1 | Plus |
| lkb1-RC | 2391 | CG9374-RC | 339..1454 | 9..1118 | 5155 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13677110..13678186 | 9..1081 | 4880 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:44 has no hits.
FMO07646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:57 Download gff for
FMO07646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lkb1-RH | 475..1566 | 3..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:48 Download gff for
FMO07646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lkb1-RC | 335..1426 | 3..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:27 Download gff for
FMO07646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lkb1-RC | 335..1426 | 3..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:27 Download gff for
FMO07646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13677106..13678179 | 3..1074 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:48 Download gff for
FMO07646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9502828..9503901 | 3..1074 | 98 | == | Plus |
