FMO07647.5prime Sequence
1168 bp (943 high quality bases) assembled on 2008-11-03
> FMO07647.5prime
CAGTCGACATGCTGTTAAACTGTACGAGGCTCACACACCTCTGCACGACT
CTCCGGGTCAGGAAAAGCAGCCAAATAAGGTTGTCCACATCATATAATCA
CCATTTGGGCAGGTGCCTCCACCATCGAACCGCCCGGTCGCTTCAACACA
GCCTTCCACCGCCGAACCGTTACCATAGCCACCTGCACCCAACACTCCGC
ATGCCGTGGTGGTGCATGCGACGTGGATTTGCACAGAGCAGCAAGTGGTT
AGCCAGGAATGCAAAGGCGAACTTACCAACTGCAGTTGGAGCCGGAATCG
TGCCCGCCCCCGTCAAAATGGGCAGATCCCAGTACGGCCGCCTGCTCACC
CTGACTAAATCGGAGAAATGGGTGCTGACAGCGGGCATTGGCTGTCTGGT
AGTTTCTTCAGCTATCACCATGTCGGTTCCTCTGTTCCTGGGCAAGGTCA
TTGATGTAGTCTTTAATAAATCGGGCATGGATAGCGCAGCCATGGCCAAA
TTGGGCGAGTACTCGGTGCTGCTCTTCGGGATCTTCGTGCTGGGCGGATT
CGCCAACTTTGCCCGCGTCCATCTGTTTGGGAATGCGGCTCTCCGAATAG
TGCGCAGTCTAAGATCCCGGCTATACAGATCTATGCTTATGCAGGAGGTG
GGTTGGTTCGATACCAAGGGCACTGGAGAACTAATAAATCGGCTGAGCAA
CGATACCTTAATGGTGGGCACCTCGTTGAGCCAGAACGTATCGGATGGTC
TGCGATCTGTAGCCATGATCGGCGTCTGCACAGGCATGATGATCTACACC
TCCCCCCAGTTGGCTGCCGTGAGTGCCTTGGTGGTTCCCGCGATGGCGGC
ATGGCCATCGTGTACGGACGCTACGTAAGGCGGATCACCAAGTAGACTAG
ACAGTACGCCTAGATTATGAAGTTTGCGAGAGCGATTTGGTATGTTAAAA
CGGTTAAACCTTCTGCGACACAACAGAGTACTGCTTTCGATGGCAACTGA
TGAAGCTCTCCGATTGGCTACAAGAAGCACGTGCAAACTATTTCCTTTGA
TGACTGCTTCGGTGGCACATCATCATATTCCACGCGCTTACGAGGACCTT
GCTTAACAGACTGCCTACATGGAGCCTCAGACTTCATCGGTTACCCGATA
TAGTAGCACAATCTCACG
FMO07647.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3156-RA | 2345 | CG3156-RA | 113..1203 | 9..1076 | 4725 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 487990..488362 | 9..381 | 1850 | 99.7 | Plus |
| X | 23542271 | X | 488419..488628 | 379..588 | 1050 | 100 | Plus |
| X | 23542271 | X | 488873..489076 | 588..791 | 1005 | 99.5 | Plus |
| X | 23542271 | X | 489142..489315 | 791..957 | 525 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:26 has no hits.
FMO07647.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:56 Download gff for
FMO07647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3156-RA | 44..1094 | 1..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:42 Download gff for
FMO07647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3156-RA | 105..1155 | 1..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:16 Download gff for
FMO07647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3156-RA | 105..1155 | 1..1034 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:16 Download gff for
FMO07647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 488874..489076 | 589..791 | 99 | -> | Plus |
| X | 489143..489402 | 792..1034 | 91 | | Plus |
| X | 487982..488362 | 1..381 | 98 | -> | Plus |
| X | 488422..488628 | 382..588 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:42 Download gff for
FMO07647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 382015..382395 | 1..381 | 98 | -> | Plus |
| arm_X | 382455..382661 | 382..588 | 100 | -> | Plus |
| arm_X | 382907..383109 | 589..791 | 99 | -> | Plus |
| arm_X | 383176..383435 | 792..1034 | 91 | | Plus |
