FMO07648.5prime Sequence
1168 bp (1052 high quality bases) assembled on 2008-11-03
> FMO07648.5prime
CAGTCGACATGAATTTACTGCCCAAAACCCGCGAGGAGTTCGCACAGACC
GATTACTGGAACGAATTCTTCAAGAAGCGCGGTGAGAAGGCCTTCGAATG
GTACGGCGAATACCTGGAGTTGTGCGACCAGATCCACAAATACATCAAGC
CGGCGGATAGGATTTTGATGCTGGGATGCGGTAACTCCAAATTGAGCATG
GATATGTACGACACAGGATTTCGGGATATCACAAACATAGATATATCTCC
CATCGCTGTGAAGAAAATGCTGGAACTGAATGCCAAATCGCGGCCGGAAA
TGAAGTTTCTGCAAATGGACGCGACAGCAATGACGTTCCCGGATGAAAGC
TTTTCGGTGTCGTTGGACAAGGGAACGCTGGATGCTCTGTTTGCCGACGA
CGAACCTGAAACGAGAGCGGTGGTGGAAAACTATTTCAAGGAAATACTAA
GAACCATGAGGAACGGTGGTCGCTATGTGGGTATCTCCCTGCTGCAAGAG
CACATCCTCAATTTCCTACTGGACTTCCTGCCCAAGCACAATTGCATGCT
GAGGATTGTTCACTGCTTGGGGGTGGAACAGGCCAACAAAGAGAAGAATG
CCGATGATGCCTTGACGCTGCCTGTTTTCGTAGTCGTCGCTACTAAATTT
AAGAGCCTTCCAATGCCAGTACTCGAATTTGGTTTCGGCAACGACAAGAT
GCAAAGATTCACCACGGTCTCCGAACTGAATAGCGCAGTTTCATCAGTCC
AAAAGGCCGCTTTGGTTTGCAACGGTCTAGCCAGATCCAACATAGCTGGT
CACAATGAGGTGATCATGGATCTGCACCGACCATCTGAGCAAACCCCTCG
CTATACTATCCACATACTGGATAAGCCGCCAGCTCGCGGCCTGGGCAAAT
ACGCGGCGTTTATCGTTCCTCAGGAAGAGAGTGGAGTGGATTTTTTCCAC
GCCTGCGGGCCGGAAAAGCTCCAGGACTCCGCAACTTCACGACTGGCTGT
GGTTACCCTCATAGAGATCAGTTTACAGTACCTTAGACGAGTGAGCAGAG
TGCGACGCATAAGAACTATCGCCAGCTGACTCACTGATCAGATCGTTTCT
AGTCTTGGATCGAGTTGGCAAGGAAACCTTATTGGTGGATCTCTAGGATA
TTCGGAAATTCGCCACTC
FMO07648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2614-RC | 2234 | CG2614-RC | 84..1255 | 8..1151 | 5120 | 97.1 | Plus |
| CG2614-RA | 2246 | CG2614-RA | 84..1255 | 8..1151 | 5120 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20657537..20657916 | 669..1040 | 1535 | 97.9 | Plus |
| 2L | 23513712 | 2L | 20656972..20657210 | 223..461 | 1195 | 100 | Plus |
| 2L | 23513712 | 2L | 20657262..20657477 | 455..670 | 1065 | 99.5 | Plus |
| 2L | 23513712 | 2L | 20656707..20656831 | 100..224 | 625 | 100 | Plus |
| 2L | 23513712 | 2L | 20656509..20656606 | 8..105 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:56 has no hits.
FMO07648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:54 Download gff for
FMO07648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2614-RA | 82..1206 | 8..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:54 Download gff for
FMO07648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2614-RA | 84..1208 | 8..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:36 Download gff for
FMO07648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2614-RA | 84..1208 | 8..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:36 Download gff for
FMO07648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20656509..20656601 | 8..100 | 100 | -> | Plus |
| 2L | 20656708..20656830 | 101..223 | 100 | -> | Plus |
| 2L | 20656973..20657209 | 224..460 | 100 | -> | Plus |
| 2L | 20657268..20657475 | 461..668 | 100 | -> | Plus |
| 2L | 20657537..20657979 | 669..1093 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:54 Download gff for
FMO07648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20656509..20656601 | 8..100 | 100 | -> | Plus |
| arm_2L | 20656708..20656830 | 101..223 | 100 | -> | Plus |
| arm_2L | 20656973..20657209 | 224..460 | 100 | -> | Plus |
| arm_2L | 20657268..20657475 | 461..668 | 100 | -> | Plus |
| arm_2L | 20657537..20657979 | 669..1093 | 95 | == | Plus |
