FMO07650.5prime Sequence
1187 bp (1020 high quality bases) assembled on 2008-11-03
> FMO07650.5prime
CAGTCGACATGACTCTTCCGCAAGCACAGCTGGACTTTTTCACGACGGCG
ACCAGTATGCTGGAATGGCATTACAATCTGGAGAGAAATAAGCCGGGTCT
GCTGGAACTGACCGGCGTTAGCCAGCATGGGCGGGCCACGATGAGCGGAC
TTAATGACTACGATTACCAGAGCCTGTCGTTTTTGAAATCGGATAGAACA
CATAACCTACAACAAATGCGAACGGTGACCAAGTCGGCTATTCCCAACGA
GATTCTGGAGCACTTTAAGCACATAAAATGCCACTGCACCATGGGCCTCT
TTCCGGAAATCGGACGTGCCTGGCTGACTATCGATTCGGAAATCTACATC
TGGACGTTCAATCAGACGAGGGATGTGGCGTACTACGATGGCCTCAGTCA
TCTGATCGTAAGCGTTGGCCTGGTGAAACCAAAACCCGGCGTCTTTGTGC
AGGACGTCAAGTACCTCCTGGTTCTCACTACGCCCATTGAGGTCATTGTC
CTGGGCGTGACATTCGGTGAGAGCTCGTACAACGAAATGCAGCTGATGAA
CCGGCCAGTTTTTGTGATTGGTACCGACAACGTGTCCATCAGCGTCATCA
AAGGAACGGATGACGGCCGCATCTTTTTGGGCGGTCGCGATGGCTGCCTC
TATGAAATTTACTATCAGGCCGAGTCCAGTTGGTTTGGCAAGCGATGCAA
GAAAATAAATCTCTCCCAAGGACTGGTCTCCTATATGGTTCCCAGTTTTT
TGAATGTCTTTTCGGAAGTGGATCCAATCGAACACATTGAGATCGATAAC
AGTCGCAAGCTTCTCTATGTCCTTACGGAAAAAGGTGTCATTGAGGCTTG
GACATCAGTACGAGTTACACGACAGCTCGAGACTAGGTCGGATTACCCAG
AACGATATTACGAATCAAGCAGTTAGTCTGATCACGACTGTGACCGTCCA
TTTTAAAAGTGTGAAAGCATCTGCCCTCTGAGCGCGACGATGCCGACACT
ACATCTGTGACGTACTCAGTGTGGTGTGCGCTCTTTTTCTCCACAACATC
GCTAATGTGAGCAACAATTTGTCCGCGTCTGCAGTCAGGGAGATACCGGA
TCGGTCACCAGCATTCAGCCACACTGTTCCATGCTAGTCTAGGACTTTAC
TGTCCAGTGGTTCACACCGTTACCCCAATGTCCACAC
FMO07650.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup154-RD | 5420 | CG4579-RD | 161..1307 | 9..1127 | 5020 | 97.3 | Plus |
| Nup154-RC | 4612 | CG4579-RC | 161..1307 | 9..1127 | 5020 | 97.3 | Plus |
| Nup154-RA | 4371 | CG4579-RA | 161..1307 | 9..1127 | 5020 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11005368..11005862 | 271..765 | 2460 | 99.8 | Plus |
| 2L | 23513712 | 2L | 11005139..11005301 | 108..270 | 815 | 100 | Plus |
| 2L | 23513712 | 2L | 11005920..11006094 | 764..936 | 775 | 98.9 | Plus |
| 2L | 23513712 | 2L | 11004980..11005078 | 9..107 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:19:14 has no hits.
FMO07650.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:29 Download gff for
FMO07650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup154-RA | 151..1241 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:26 Download gff for
FMO07650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup154-RA | 154..1244 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:26 Download gff for
FMO07650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup154-RA | 154..1244 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:26 Download gff for
FMO07650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11004973..11005078 | 1..107 | 97 | -> | Plus |
| 2L | 11005139..11005301 | 108..270 | 100 | -> | Plus |
| 2L | 11005368..11005861 | 271..764 | 99 | -> | Plus |
| 2L | 11005921..11006093 | 765..935 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:26 Download gff for
FMO07650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11004973..11005078 | 1..107 | 97 | -> | Plus |
| arm_2L | 11005139..11005301 | 108..270 | 100 | -> | Plus |
| arm_2L | 11005368..11005861 | 271..764 | 99 | -> | Plus |
| arm_2L | 11005921..11006093 | 765..935 | 98 | -> | Plus |
