FMO07652.5prime Sequence
1210 bp (1072 high quality bases) assembled on 2008-11-03
> FMO07652.5prime
CAGTCGACATGGTGGAAAATATATCACTGAATGTTACTGTAAAGTCGTCG
GCTCGGAAAAATCAACAGTCGCCCGCGCTTTCGGTTAAAAAACGTGCACA
GAAATCCCAGGATTTCGACTTTCAATTCAATGTGGACAAGCCCAAAGTCA
AGGCAATCGTTGTGCGAAGAAGGGCGCCTCCTTCGAAAGTTGAACCTACA
AATTCATCAGTTCCCAATACCACGAAATCGCCGACGCCTTCAGTTTCCTC
CAGCAAATCCGCAATTTCCACTCTTTCAGCATCCCCCAAAGCAAATGCAT
CCAACGATGATCTTATGTTCAATGTTAGCCCAACGAAACCACCTGTTAAG
AGCGTTTTAGGCGACGATTTCATGCTAAATGTGACCACAAAGCCGGTGGT
TGCCCAGAAAGCCAAGCCAAAAATCACACGAGCCGAAAGATTGGGCAAGA
AACAGAGGCAGGGCAAGCCACTGACGAAGCTCAGCGAAGAGCAGATCACG
CGGGCGCTGAAGAGCAACAAAAAGCCAAAAAATCCAAATCAATTACCCAC
GCCCGGTGACCTTTTCCGCGCTCAACTGGAGGAGGAGAGGCGGCAAAAGC
GTCGTGAAGAGGGAGGAGGGGATCAGGAAGCCAGCGCCGATGAGGAGGAT
GCGAAGAACAACTCAGGAGGGGGATCTCCGAGGGTAAAACCGAGTTCAGC
CGTTAAGGAGTCCAAAAAAGTCATCAGATATTGAGGATTCCGGCGAATCC
GGCGAAGAATCTGCAACATCCGATGAGGAACCAGATGAATCCAGTGCACA
ATCTCCTGGACAAGAAAAGGAACCCAAACAAACCGCGAAGAAACCACCGA
AAGCCGAGGAAACCTCGTCCACAAACCGTTTTCGCACCAAGAAGATCGGC
CTCTTCGACCAAAGCGACGTGAGGCACTCAGCAACTGGGGCAAGAGCGTG
AAGCCGTCAAGGAGACATCTTTACAGGCTCTAAAATATCCACGTTGGGAC
TGCATCCTCATGCTGTAAAGACTGAGATCTGCTAGCATCGAGAGCTACTA
GCGTGCAGCAAAGAACATTCCGAGTCTCAGCAGAATGTGCTCGGTACGTC
GCGACCGACCGAAAGAACCTTGCATATGTCTCTAACTGTGAACTGTGCCA
AACGGCTTAAGGAATAAGGCTAAAGAATGCCGTGCTGACCTGGGTGAATT
GTTACCCACA
FMO07652.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8611-RA | 3614 | CG8611-RA | 104..1179 | 9..1071 | 4990 | 98.4 | Plus |
| CG8611-RC | 3917 | CG8611-RC | 104..1182 | 9..1071 | 4950 | 98.1 | Plus |
| CG8611-RB | 4145 | CG8611-RB | 104..1182 | 9..1071 | 4950 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17420963..17421927 | 1021..62 | 4450 | 99.1 | Minus |
| X | 23542271 | X | 17421983..17422042 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:00 has no hits.
FMO07652.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:26 Download gff for
FMO07652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8611-RA | 114..1197 | 9..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:17 Download gff for
FMO07652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8611-RA | 104..1187 | 9..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:10 Download gff for
FMO07652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8611-RA | 104..1187 | 9..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:10 Download gff for
FMO07652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17420895..17421920 | 69..1078 | 98 | <- | Minus |
| X | 17421983..17422042 | 9..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:17 Download gff for
FMO07652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17314928..17315953 | 69..1078 | 98 | <- | Minus |
| arm_X | 17316016..17316075 | 9..68 | 100 | | Minus |
