FMO07656.5prime Sequence
1200 bp (1026 high quality bases) assembled on 2008-11-03
> FMO07656.5prime
CAGTCGACATGAAAATCAAACATTATCCGGGCAAAGCCGTCGATGCGAGT
CTCTCGCTGGAGGGCAGCAGTGCCATGGGTGCCCTGTACGAGGCCAATTG
GCTGAGGGCTGCGAATCAGCCCGCCGCTCCAGCCACAACGGGCACCAAAT
TGAGCAGGCAGAGCAGCTCCGCCGGCAGCAGTTTCCTCATCGAGGGCATC
TCCGCCCTGAGCAAGTACCAAATGACCCTGGAGAATATCCGGCAGCTGGA
GCTGCAGTCGCGTGACAAACGCATAGCGAGCACGATTAAGGAACTCAGCG
GCTATAGGCCATCGGCACTGCAGCATCATCAGCAGCAGCAGATGCATAAC
GTTTGGGTGGCCGAGGATCAGGATCAGGAACACGAAGAACTGGAAGATGC
TTCGGAGGGAAAGGAGAAGTTGGCTAGTATCCAGGAACCCCCTGCAGTTA
ACCACTATGTCCTGGACCCGACGGAGAGACCAAGGGTTCCCAGACCCCGG
CAACAGTTCTCCGTGAAACCGCCTTCCTTGCGTCGCTCCCAAACCATGTC
GCAACCGCCCAGTTATGCCACCTTGAGATCGCCCCCGAAAATCAAGGAAA
ATCTTAGCAAAAGTTCCTCCGCCTACTCCACATTCTCCTCGGCTGCAGAG
GATTCCCAGGATCAAGTAGTGATCTGCCAACAGCCACAGAGACTGATGGC
TCCGCCACCCAGAGAACCGCCTCCGGAGCCACCCAAAAGGGTATCGAAAC
CCCTGAGCAGATCGCAAACTTCGGTTCAGCGGTACGCCACGGTTAGGATG
CCCAACCAGACCACTTCGTTCAGCAGAAGTGTGGTCAGGTCTAGGGATTC
CACCGCCTCCCAGAGACGTCTCAGTTTGGAGCAGCCATCGAGGGACTCAA
ACTGGAGGGGAGAAGCTGTTCGTCAGAGAGTCCACAAATCTCACCAGCTG
CCAGCAGTATGCAGCTCCAGATCTCACGGGGAGGTTTCTGTATCCCACGA
CCGCGCCTCATCGTCCAGGGCACACATATGCCCGTCGACGCAGACGGAAA
TCTCCAAGAGCAATCCAGCGGTGCAGAGGAGAAGCAAGAAGATGACCGCA
TGAGTTCCCGCAAGTCAGTACCCTCCATGCGAGCAGTCCTGGCGATGCGA
TCTGTTACACGGCAGGGAGATCGGTCGACACTCATCATTCATCCGCGTAT
FMO07656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| for-RK | 3223 | CG10033-RK | 378..1474 | 9..1092 | 5035 | 98 | Plus |
| for-RG | 3826 | CG10033-RG | 438..1534 | 9..1092 | 5035 | 98 | Plus |
| for-RD | 4218 | CG10033-RD | 830..1926 | 9..1092 | 5035 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3626342..3627438 | 1092..9 | 4760 | 97.7 | Minus |
Blast to na_te.dros performed 2014-11-28 23:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6864 | 234..385 | 133 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2521 | 311..397 | 131 | 62.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1098 | 309..346 | 111 | 79.5 | Plus |
FMO07656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:20 Download gff for
FMO07656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RJ | 319..1427 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:20 Download gff for
FMO07656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RG | 430..1538 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:53 Download gff for
FMO07656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| for-RD | 822..1930 | 1..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:53 Download gff for
FMO07656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3626347..3627442 | 1..1088 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:20 Download gff for
FMO07656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3626347..3627442 | 1..1088 | 97 | | Minus |
