FMO07657.5prime Sequence
1189 bp (1023 high quality bases) assembled on 2008-11-03
> FMO07657.5prime
CAGTCGACATGTCGGTACACTATAAATTTAAGAGTACACTCAACTTTGAT
ACAATTACTTTTGATGGACTTCACATTTCTGTCGGGGACTTAAAAAGGGA
GATTGTGCAGCAGAAGCGACTGGGCAAAATCATCGACTTTGATCTCCAAA
TAACAAATGCGCAGAGTAAAGAAGAATACAAGGACGATGGGTTCCTTATT
CCCAAAAACACAACGCTGATCATATCGCGCATCCCCATCGCCCATCCCAC
AAAAAAGGGCTGGGAGCCACCAGCAGCAGAAAATGCCTTTTCGGCGGCGC
CTGCCAAGCAGGACAACTTCAACATGGACCTGTCCAAAATGCAAGGCACG
GAGGAGGACAAAATCCAGGCCATGATGATGCAGAGCACAGTCGACTATGA
TCCTAAGACGTACCATCGTATTAAAGGACAATCGCAAGTGGGAGAAGTTC
CCGCATCCTACCGATGCAACAAATGCAAGAAAAGCGGACACTGGATCAAA
AACTGTCCCTTTGTGGGGGGAAAGGACCAGCAAGAGGTCAAACGGAATAC
TGGTATTCCGCGGTCTTTCCGCGACAAGCCAGATGCGGCTGAGAACGAAT
CAGCCGATTTTGTGCTGCCTGCTGTACAAAAACCAAGAGATACCGGAGGA
TCTGATATGCGGCATATGCCGAGATATATTCGTCGATGCTGTCATGATAC
CCTGCTGCGGAAGTTCCTTTTGTGACGACTGTGTGCGAACCTCCTTATTG
GAGTCAGAGGATAGTGAGTGCCCCGATTGCAAGGAGAAGAACTGTTCGCC
TGGCTCCCTGATACCTAATCGGTTCTTGAGGAATTCGGTGAACGCCTTTA
AAATGAGACTGGGTATAACAAAGCGCGGCTAAGCCAGCTGCAGTAAAAAA
TGAGGAAAAACCTCCTGTTGAAAAAGAAGTGGAAGAAAAAGCCAGTCGCG
GAGTGCACCCGAAGAGACTGAGTGAAACTGAAAGCAAAAAGATCCGAATC
GATGCAGTATCCGCCAAATCGGAATCTCATAGCCTCCCGCACCCGACATC
CGGAAGGAAAGATAAAATTGATCGACTACGAGATACTACTTAAATTGCCA
GCCTCACTGAATTACACGGGTCCAGCTAGATCCTAGTATCCAGAACGAAT
TCTTCATGCGAGGACAGGTCGAATTATGTTTCCGAAATT
FMO07657.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snama-RA | 3936 | CG3231-RA | 119..1162 | 9..1041 | 4795 | 98.2 | Plus |
| snama-RB | 1972 | CG3231-RB | 247..1290 | 9..1041 | 4795 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24088065..24088543 | 410..887 | 2250 | 99.4 | Plus |
| 2R | 25286936 | 2R | 24087774..24088013 | 173..412 | 1200 | 100 | Plus |
| 2R | 25286936 | 2R | 24087551..24087716 | 9..174 | 830 | 100 | Plus |
| 2R | 25286936 | 2R | 24088602..24088689 | 886..972 | 300 | 94.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:24 has no hits.
FMO07657.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:19 Download gff for
FMO07657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snama-RA | 117..1146 | 9..1028 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:16 Download gff for
FMO07657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snama-RB | 247..1276 | 9..1028 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:23 Download gff for
FMO07657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snama-RB | 247..1276 | 9..1028 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:23 Download gff for
FMO07657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24087551..24087716 | 9..174 | 100 | -> | Plus |
| 2R | 24087776..24088010 | 175..409 | 100 | -> | Plus |
| 2R | 24088065..24088543 | 410..887 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:16 Download gff for
FMO07657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19975074..19975239 | 9..174 | 100 | -> | Plus |
| arm_2R | 19975299..19975533 | 175..409 | 100 | -> | Plus |
| arm_2R | 19975588..19976066 | 410..887 | 99 | -> | Plus |
