FMO07658.5prime Sequence
1203 bp (1028 high quality bases) assembled on 2008-11-03
> FMO07658.5prime
CAGTCGACATGGATGTAGACTTCGGCGCGCAGGCGGGGCAGTCCTACCGC
ACGGTGCAGCTTTCCGCGAAAGAAGTGCTCGCTGCTGGCCGCCGTCAGCA
TTATTGCAACATGATCGACTTGTTGGCCAGCAGCTGCAAAAGCTCCGGTT
TGATAGCCACTTCCTTTACGGATGACGAACTGGTGGAGTTCTGGCTGGGA
GATATCCTGCCGCTTATGTTCGATGCGGACCGAAAGATCCAGGACTGTGC
CGTGGCAGCTCTTGCGGAGGCACTGGTGGCTCTTGACGTGTCCGTTATCC
ACTCGGCCAAGTGCTGGCCTCAGATCCGCAGTGAATTTGTCGACAAATAC
ACCATCATCATCGGGGAGATGCGCGATGCTAAGAACTCCAACTGGCACAA
AATATGGACGCTGCTGGTACAAATCATGGACGAGGATTTGCTCAGGGGCT
GTGTATATATCAACAAATTCTTGGCTCTGGTTGAATTGGGCTTCCGCAAC
CCGGATAATGGTGTGCGGTCGGAGGCATTTCTTTGCTGGCGCGTGCTCAT
CAAGATCTTTGCCGCCTACGACGAACTGACATCCGCGAAGAGGCTTCGTT
TGCTGCTGATCCCCCTGCGCACTTCACAATCGCGATCCTCGCACGTGAGT
GGCATCAAGTTGCGAGTGTGGTGGTATCTGCTCAGCTGCCTGGACCACGA
GTTACCCAAGTCTTTTGACAGCGCCGTGGAGCACTTTTTGGCTTTTATGC
TAGGCGGAGGTCCACGAAATCTGGCTACGGGTCTGGCGCACAACTACCAG
ACGGCTCGGGAGTTGGCCCTGCCCTGCCTTGTGGCCCTTTGGGGCGTGAG
TCCAGTGAACCGTTGCAGCGTCTAATGAGAGAGCTACGCTTGAGACCTTG
GTCCAGCCCTCGCTCTGATGAGCGTAGAGGTATTCAACAGCATTGAAACC
TCTTTTGCCGCTGCGTTTCCGTTTAAAGTGCTTACGAGAACGATGCCACA
GAAGCGAACACTCTGCTGCAGTTGCTCGTGCGATCTGTGCCTGCATGTTT
CGTTGGCAGTTGCTCCATCATTGGCGTGCTGCATGAATCGAGAAAATCTG
CAAGCTGAGATACTCCGTGACGATTGACGACTTCATCCTTGCGCCAATAC
TTGGATTGGACGTGCTTCCTCGAAAGCAACACACACACCTTGTGTGAGAT
GCT
FMO07658.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rif1-RA | 4605 | CG30085-RA | 141..1276 | 8..1117 | 5010 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15867914..15868819 | 1006..111 | 4030 | 98.9 | Minus |
| 2R | 25286936 | 2R | 15868905..15869007 | 110..8 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:20 has no hits.
FMO07658.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:32 Download gff for
FMO07658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30085-RA | 130..1274 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:30 Download gff for
FMO07658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rif1-RA | 132..1276 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:30 Download gff for
FMO07658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rif1-RA | 132..1276 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:30 Download gff for
FMO07658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15867787..15868819 | 111..1117 | 97 | <- | Minus |
| 2R | 15868905..15869010 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:30 Download gff for
FMO07658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11755292..11756324 | 111..1117 | 97 | <- | Minus |
| arm_2R | 11756410..11756515 | 1..110 | 96 | | Minus |
