Clone FMO07660 Report

Search the DGRC for FMO07660

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:76
Well:60
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5508-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07660.5prime Sequence

1184 bp (1027 high quality bases) assembled on 2008-11-03

> FMO07660.5prime
CAGTCGACATGTTGACGACCGTCCTGAACTTTGCCCAGCGCGTCGCCGAG
ATTTCTTTGCTCGGCGGCATCGAGATTGCATCAGTTGCCCTTATTGTCTA
CTATATATTCGCCAAGACGAGGGCACCGGTAATCATCGCTAGCCTGTTTC
CCAATCTGAATCTGAGCTACCGGACGAGCTACCTCAGCAAGATCAACACC
ATACGCAGCGATCTTCTGGTCACTTTGCGATCATCCAATGAGCCCAAGAC
GCAGAATTCGGTGGCTCATGGCATTGGGACGCAGAATATGTTGGAGCTGA
CCCCGCATTCGGGTCAGAAGCCTTTTAAGAAGCTATTCGACTGGGGCGTG
CTCTTCCCATATGTTGCCCAGGTGGTGCGCAGCGAGAAGTTCGAGTACCG
ACAGGTCACCGAGATCGTGCACAACGATGCTGTACTGAAGCATGCAATTA
AACAGGCCGCCGAGCAGACGCTAAGGGAGCAGAGATATGCTAAAAATGGT
CATCGTCTGCTCACGCGCAGTGCTAGTGGAGATCAGGAGGCGCAGGAGGA
GGAGGACGAGAAGAGGGGTATATCCTATCAGGCCATTCTGCGTAAGCAGG
AGCAGCGCGCCATTAGCATACTGAAGGACATGGGCTCCACTCTGAACAAT
GGCCTTTTGGCCTTCACTTCCTGGATCCTGTACAAGTTGCTGCCCTGCTT
CCTCTCCGGAGTCGTTACGAACACGAAGCAGATCGAGATGCTCAAAACAG
CCACAGAGCGTTCGCCGGGCACTCCGCTGATATTTGTTCCGCTGCATCGC
AGCCACTTGGACTACATCATGGTCACATGGATACTCACGAACAACGATAT
ACGCAGTTCCTCTGGTAGCCGCTGGCAACACCTGCAAATTCCGGTCTTGG
TGGGCTCCTACGTGGTTTGGGTGCTTTCTTCATCAAACGCAAGATTGATC
CTGTGGAAGGCAAGAAGGACGTGCTTTAATCGCGCTGCTCTACACCTGTA
TCTGACCCACGCCTTGAAGCAAGGCCACAACCGTCGAGTTCTACATCGAG
GGCGACGACGCCGCACTTGGCAGCCGTGCATGCCAAGGGCGGCATTCCTT
TCTGGTGAATTGTTACGCCTCATGACGGCAGCTACCCGACGCACTGTCTG
TACCCGGTTCCGTATACTACAAGCGTCTCGCCTG

FMO07660.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
mino-RE 3176 CG5508-RE 216..1390 8..1180 5300 97.6 Plus
mino-RA 3546 CG5508-RA 690..1864 8..1180 5300 97.6 Plus
mino-RB 2687 CG5508-RB 168..1110 240..1180 4140 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27930202..27930897 403..1097 3010 97.7 Plus
3R 32079331 3R 27929981..27930147 240..406 835 100 Plus
3R 32079331 3R 27929229..27929349 120..240 605 100 Plus
3R 32079331 3R 27925880..27925994 8..122 575 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:37:28 has no hits.

FMO07660.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:30 Download gff for FMO07660.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-RA 682..1799 1..1120 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:19 Download gff for FMO07660.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-RA 684..1801 1..1120 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:41 Download gff for FMO07660.5prime
Subject Subject Range Query Range Percent Splice Strand
mino-RA 684..1801 1..1120 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:41 Download gff for FMO07660.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27925874..27925993 1..121 97 -> Plus
3R 27929231..27929348 122..239 100 -> Plus
3R 27929981..27930145 240..404 100 -> Plus
3R 27930204..27930918 405..1120 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:19 Download gff for FMO07660.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23754953..23755070 122..239 100 -> Plus
arm_3R 23755703..23755867 240..404 100 -> Plus
arm_3R 23751596..23751715 1..121 97 -> Plus
arm_3R 23755926..23756640 405..1120 97   Plus