FMO07660.5prime Sequence
1184 bp (1027 high quality bases) assembled on 2008-11-03
> FMO07660.5prime
CAGTCGACATGTTGACGACCGTCCTGAACTTTGCCCAGCGCGTCGCCGAG
ATTTCTTTGCTCGGCGGCATCGAGATTGCATCAGTTGCCCTTATTGTCTA
CTATATATTCGCCAAGACGAGGGCACCGGTAATCATCGCTAGCCTGTTTC
CCAATCTGAATCTGAGCTACCGGACGAGCTACCTCAGCAAGATCAACACC
ATACGCAGCGATCTTCTGGTCACTTTGCGATCATCCAATGAGCCCAAGAC
GCAGAATTCGGTGGCTCATGGCATTGGGACGCAGAATATGTTGGAGCTGA
CCCCGCATTCGGGTCAGAAGCCTTTTAAGAAGCTATTCGACTGGGGCGTG
CTCTTCCCATATGTTGCCCAGGTGGTGCGCAGCGAGAAGTTCGAGTACCG
ACAGGTCACCGAGATCGTGCACAACGATGCTGTACTGAAGCATGCAATTA
AACAGGCCGCCGAGCAGACGCTAAGGGAGCAGAGATATGCTAAAAATGGT
CATCGTCTGCTCACGCGCAGTGCTAGTGGAGATCAGGAGGCGCAGGAGGA
GGAGGACGAGAAGAGGGGTATATCCTATCAGGCCATTCTGCGTAAGCAGG
AGCAGCGCGCCATTAGCATACTGAAGGACATGGGCTCCACTCTGAACAAT
GGCCTTTTGGCCTTCACTTCCTGGATCCTGTACAAGTTGCTGCCCTGCTT
CCTCTCCGGAGTCGTTACGAACACGAAGCAGATCGAGATGCTCAAAACAG
CCACAGAGCGTTCGCCGGGCACTCCGCTGATATTTGTTCCGCTGCATCGC
AGCCACTTGGACTACATCATGGTCACATGGATACTCACGAACAACGATAT
ACGCAGTTCCTCTGGTAGCCGCTGGCAACACCTGCAAATTCCGGTCTTGG
TGGGCTCCTACGTGGTTTGGGTGCTTTCTTCATCAAACGCAAGATTGATC
CTGTGGAAGGCAAGAAGGACGTGCTTTAATCGCGCTGCTCTACACCTGTA
TCTGACCCACGCCTTGAAGCAAGGCCACAACCGTCGAGTTCTACATCGAG
GGCGACGACGCCGCACTTGGCAGCCGTGCATGCCAAGGGCGGCATTCCTT
TCTGGTGAATTGTTACGCCTCATGACGGCAGCTACCCGACGCACTGTCTG
TACCCGGTTCCGTATACTACAAGCGTCTCGCCTG
FMO07660.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mino-RE | 3176 | CG5508-RE | 216..1390 | 8..1180 | 5300 | 97.6 | Plus |
mino-RA | 3546 | CG5508-RA | 690..1864 | 8..1180 | 5300 | 97.6 | Plus |
mino-RB | 2687 | CG5508-RB | 168..1110 | 240..1180 | 4140 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27930202..27930897 | 403..1097 | 3010 | 97.7 | Plus |
3R | 32079331 | 3R | 27929981..27930147 | 240..406 | 835 | 100 | Plus |
3R | 32079331 | 3R | 27929229..27929349 | 120..240 | 605 | 100 | Plus |
3R | 32079331 | 3R | 27925880..27925994 | 8..122 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:28 has no hits.
FMO07660.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:30 Download gff for
FMO07660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5508-RA | 682..1799 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:19 Download gff for
FMO07660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5508-RA | 684..1801 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:41 Download gff for
FMO07660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mino-RA | 684..1801 | 1..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:41 Download gff for
FMO07660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27925874..27925993 | 1..121 | 97 | -> | Plus |
3R | 27929231..27929348 | 122..239 | 100 | -> | Plus |
3R | 27929981..27930145 | 240..404 | 100 | -> | Plus |
3R | 27930204..27930918 | 405..1120 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:19 Download gff for
FMO07660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23754953..23755070 | 122..239 | 100 | -> | Plus |
arm_3R | 23755703..23755867 | 240..404 | 100 | -> | Plus |
arm_3R | 23751596..23751715 | 1..121 | 97 | -> | Plus |
arm_3R | 23755926..23756640 | 405..1120 | 97 | | Plus |