FMO07662.5prime Sequence
1196 bp (1063 high quality bases) assembled on 2008-11-03
> FMO07662.5prime
CAGTCGACATGATGGGAGTAAACCAGACCATGGAACTGAAGGAACTCTCT
ACAGAGGAAGCTTTGATGCGAACCCTATCCACAGAGCTCGGCAATGAAGT
GGAACCTCTCTCCACCCCCGCCATTCTCAACGAATCCAGTCAAACTTCTG
TGGATGAAGTGGATCTTTGTGAGCTAACCAATGGCGTCGATAGCTCCGAT
AACGTCAAAGTTATTGACAAACCAAAAAAGATATCGGACCGAGAGCGTAA
TCCAGGTAGTGATTTGGACGCTCTTCTGGACAAGATTAGCTCTATTGTGG
ATTGTAGTCCCAGGAATTCCGACGATATCGATTCACTCGATAGAGACGAG
GAATGCGACTCTGCGTCGGCGAAGAAGAGAACAGCTGCTGATACGGACGA
AAATCTAAAAGAGCAAAGAGAAAAACCAGAAGAAGAAGAAGAAGGCGAAG
AGGTGCTTAGTTCTCTAGAAGGAGAAGAGTGCATCGATCCTGATTCTGAA
TTAAAGACTGAGGAGAAATTAGATGAAACTGAAGAACACGCTTCAGCTAA
AGAATCCACACAGAAAACCGAAGATTTAGCTGATTCAGATGAAATATTAA
AGTCAAAGGAAGAGGATGAAGTCCCAGCCAATACTGCGGATAACATTGAA
AAAGACCGGAAAAATACATCAACAGATGATGTGTTTATGTATGCTTTAGA
CTGTATATCGAGTGCCGACGAGTTTGATGCCTTTGCCTCTCAGGACTCCA
AGAAGGCGAAGCCAAGCAAAAAACTAAACACGGAAAACAACTCATCTGTC
AATGATTTAGAAGACATTTCATCTGATGACGATGATATAATTAAAGGAAA
CGGAAAAACCCAACACTGAGGTTATAGATTTAGACTCGTCGAGTGAATGT
GTGCCTTGCGAAGCGGATCAGAGGTCGAGGAAACTGAAGCTACACAGAAG
ATACCGAAGTCCTTACTCACGTAGGTTCTACGAAGAAATCATTGATTTGC
AAATAATATCTCAGAAAGTCAGCGAGTGCGGCCGATATGAGTCTGTCAGC
TGATCAACATTGACAGAAGTAAGAAGCAATGTAGTGAGACGAGTACGAAA
GTCGAGAGTTATTCATTCGAGCGAAGTCAATACATGATGACCTGAGATCC
AGGAATCAGGACTGAGACCAGGAAAGAGAAGACCGGTATTATCGGT
FMO07662.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wde-RB | 4657 | CG12340-RB | 92..1163 | 9..1069 | 5050 | 98.8 | Plus |
| wde-RA | 4806 | CG12340-RA | 241..1312 | 9..1069 | 5050 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10804563..10805514 | 1061..120 | 4225 | 98.4 | Minus |
| 2R | 25286936 | 2R | 10805575..10805686 | 120..9 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:55 has no hits.
FMO07662.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:13 Download gff for
FMO07662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12340-RA | 220..1314 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:06 Download gff for
FMO07662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wde-RA | 233..1327 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:20 Download gff for
FMO07662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wde-RA | 233..1327 | 1..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:20 Download gff for
FMO07662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10804539..10805513 | 121..1082 | 98 | <- | Minus |
| 2R | 10805575..10805694 | 1..120 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:06 Download gff for
FMO07662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6692044..6693018 | 121..1082 | 98 | <- | Minus |
| arm_2R | 6693080..6693199 | 1..120 | 97 | | Minus |
