FMO07663.5prime Sequence
1192 bp (1046 high quality bases) assembled on 2008-11-03
> FMO07663.5prime
CAGTCGACATGTTCATTCCGGCCGCCCAGTCCGCGTACAGGACGCTGCGC
AAGACCCAGCCACGCGTCCGGCTCAACGCCATCTTCAAAAATGGCTACTC
CAGCAAGGTGGAGTACAAGCCCATCCGGTCAGTGCTGGTGGCTAACCGCG
GTGAGATCGCCATCCGAGTGTTCCGTGCCTGCACAGAGTTGGGCATCAAA
TCGGTGGCGGTCTACTCGGAGCAGGATAAGATGCACATGCACCGACAAAA
GGCCGACGAGTCGTACATAGTGGGCAAGGGTCTGCCCCCGGTGGAGGCCT
ACCTCAACATTCCAGAGCTAATTAGGGTGTGCAAGGAGAACGATGTGGAT
GCCGTGCATCCCGGCTACGGGTTCCTTTCAGAGCGCAGTGACTTCGCCCA
AGCGGTGATTGATGCTGGACTGCGCTTCATTGGCCCCTCACCCGAAGTCG
TCCAGAAGATGGGTGATAAGGTGGCGGCTCGTGTGGCGGCCATTGAAGCG
GGTGTGCCCATTGTGCCCGGCACCGACGGTCCAGTGACCACCAAGGAGGA
GGCACTGGAGTTCTGCAAGAAGCACGGACTGCCCGTTATCTTCAAGGCCG
CTTACGGAGGCGGAGGTCGCGGCATGCGCGTCGTCCGCAAAATGGAGGAT
GTGGAGGAGAGCTTCCAGCGAGCCAGTTCCGAGGCCAAGGCCGCCTTTGG
CAATGGTGCGATGTTCATTGAGAAGTTCATCGAGCGACCGCGTCACATTG
AGGTTCAACTGCTGGGAGACAAGGCCGGGAATGTAGTGCATCTGTACGAA
CGTGACTGCTCCGTGCAGCGTCGCCACCAGAAGGTGGTGGAGATCGCCCC
AGCGCCACGCCTGCCCATCGAAATCCGGGACAAGATGACGGAGGCAGCAG
TGCGCTTGGCCCGCCATGTGGCTATGAAACGCCGGACCGTGAGTTCCTTT
GCGACGAGTCCGCACTTCTACTCATCGAAGTGACGCCCGTCTACAGTGAG
CACACGTCACCGAGAGATAACAGCATCGATTGGTGCAGTCGCAATCCGGC
GTGCGAGGCATGACCCTACCCGATGGGCCTACCGCAGACAGATCTGCGGT
GCAGGCATCCAGGCGGTGACACGAAATCGGCAGATCAGCAACGTGCTGAA
GTCTCGATCTGGCAAGGAATGGCCATATAGGTGGTGGAACAT
FMO07663.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1516-RM | 4374 | CG1516-RM | 346..1428 | 8..1073 | 4955 | 98.2 | Plus |
| CG1516-RL | 4256 | CG1516-RL | 228..1310 | 8..1073 | 4955 | 98.2 | Plus |
| CG1516-RK | 4191 | CG1516-RK | 163..1245 | 8..1073 | 4955 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9855125..9856022 | 995..106 | 4110 | 99 | Minus |
| 2R | 25286936 | 2R | 9856081..9856183 | 110..8 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:29:33 has no hits.
FMO07663.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:12 Download gff for
FMO07663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1516-RE | 115..1223 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:31 Download gff for
FMO07663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1516-RK | 157..1265 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:03 Download gff for
FMO07663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1516-RK | 157..1265 | 1..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:03 Download gff for
FMO07663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9855018..9856020 | 108..1090 | 97 | <- | Minus |
| 2R | 9856084..9856186 | 1..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:31 Download gff for
FMO07663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5742523..5743525 | 108..1090 | 97 | <- | Minus |
| arm_2R | 5743589..5743691 | 1..107 | 96 | | Minus |
