FMO07665.5prime Sequence
1221 bp (1037 high quality bases) assembled on 2008-11-03
> FMO07665.5prime
CAGTCGACATGGGAACTTTGTCACTGAGCGATTTCGAAGCTGTGAAGATT
CCCGTACCCTGGGGTCACATTTCTGGACGTTGGTACGGAAATCGGAACGA
GCGACCCATCTTGGCGATTCACGGATGGCTGGACAACCTGGGAACCTTCG
ATCGGCTCATTCCCCTGCTTCCTGACTATCTAGGAGTACTCTGCATCGAT
CTGCCAGGACATGGAAGATCCTCGCATTTGCCACCGGGAATGTACTACAG
TGTGTACGAGTACGTGTTCACTATTCCACTGGTCATGAAGGAGTACGGAT
GGTCAAAGGTCTCTCTCATTGGACACTCACTGGGCGGAGTCCTGAGCTTC
ATTTATGCCTCTCTTGCTCCTCACACCGTCGATATGATCGTCTCCCTGGA
CATACTGCTCCCCTTGAGAAACGACATAGACTACATGGACCTTAGTATAG
AGAAACAACTAGTGAATGTTGAGCGACAGAAGCTGGGAAATTACATTGAG
CCGCCCTCCTACACGCACAACCAATTGGGAAAGGTGCTGGCTGCGGGAAG
CTTTAATTCCGTATCCCCCGAACTGGCTAAGCACCTCCTCCACCGCCAGT
TGGCCAAGTCGAAACTGTATCCCGAACGGTTCTATTTCACTAGGGATATT
CGAGTAAAGTACTACCACTACATAGATATCGACGATAGTCTGGGGGCAGA
AATGGCGAGGCGGATCATTAAAAAGCCATATCTAATCATCAAGGGCTCCT
TGTCACCATATCTCTCCGTCCGCAACAACGAGGCTATATCGATTTTGGCC
AAGGATAATCCGCACTTTGAGTTCTACGAGGTGGAAAACGGCACCCATCA
TCTGCATCTCCATGCCGCCGAGGAATGCGCCGGTTACATTGTGCCCTTCA
TCCAACATCACAGACCTCCTGCTATGACCTCTGGACTGTGCCGGAAAGGA
AGATAGATCGAGAAAACCAAGCGATTTTTCACATGGACAACAAAAAGCGC
AGCAGTTGGCAAGCTTTTAGACCATTCGTTTGGCCGCGCGGCCAGGTAGT
GTCATAATCATAATCATATCATATCATATCACACTAAGCTAGGAATCTGT
CATGACTAGTGCTGAATCCACCAATAAACGCCCGCCGCCACCGGAGCGTT
CGGACATCAATGGATTCGAGTCTTACTGATCTATACACCGATCCGAGAGG
CGACCTGCGAATTCCAAATAG
FMO07665.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5704-RB | 1289 | CG5704-RB | 126..1125 | 9..1004 | 4900 | 99.6 | Plus |
| CG5704-RA | 1220 | CG5704-RA | 126..1125 | 9..1004 | 4900 | 99.6 | Plus |
| CG15879-RA | 1389 | CG15879-RA | 126..538 | 4..416 | 730 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2169717..2170692 | 1004..33 | 4680 | 99.6 | Minus |
| 3L | 28110227 | 3L | 2168401..2168761 | 416..56 | 680 | 79.2 | Minus |
| 3L | 28110227 | 3L | 2173650..2173960 | 352..42 | 520 | 77.8 | Minus |
| 3L | 28110227 | 3L | 2172387..2172680 | 336..43 | 480 | 77.6 | Minus |
| 3L | 28110227 | 3L | 2173080..2173195 | 919..804 | 265 | 81.9 | Minus |
| 3L | 28110227 | 3L | 2167889..2167998 | 916..807 | 250 | 81.8 | Minus |
| 3L | 28110227 | 3L | 2171880..2171938 | 850..792 | 235 | 93.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:36 has no hits.
FMO07665.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:09 Download gff for
FMO07665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5704-RA | 104..1113 | 1..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:09 Download gff for
FMO07665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5704-RA | 121..1130 | 1..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:54 Download gff for
FMO07665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5704-RA | 121..1130 | 1..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:54 Download gff for
FMO07665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2169717..2170692 | 33..1004 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:09 Download gff for
FMO07665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2169717..2170692 | 33..1004 | 99 | <- | Minus |
