FMO07670.5prime Sequence
1204 bp (1038 high quality bases) assembled on 2008-11-03
> FMO07670.5prime
CAGTCGACATGAACGCCACACTCAATTCCGCGGGCGGCAAGCGTCAGCTG
CGCTTTCGCGGCGACGTCACCGGCAGCCGAGTGGAGGAACTGCATCATCA
GCAGCAGGAGGAGCAGAAGCAAAAGGCGCCGCTCGCCCAGGATGACGTTG
CAGCGACGCCGACTGCGACGCCGGCAGCGGGCTCAGCGCAGCAGCGACTG
CAGAGCGGAACCGCCGAAACCTGCACAAACACATTCTACGACTTCTTCAA
AGTGGAGATGACACGCGGCTATATGCTGGAGCACGACGAGGAGCGCTATT
CGGCGCGTAGGCAGAAGATCTACAGCTTCATGCGCATACCGCGGGATCTG
GAGCGATTCATGGTGTACGGGATCATGCAGTGCGCCGACTCATTTCTCTA
CATTCACACTTTTCTGCCCGTCCGATTTGTGATGGCCGTTTGGGCCCTAG
TTTCCAGGACGGTGGCAAGAATCTTTCGACTACGCAGCAGCGGACAAAGG
CTGCTATCGCCGGCGGAGATCTGTGATCTGCTGAAGGGCGTCATCTGGAT
GACGGTGACGCTGATAATGCTCCTGGTGGACACGAATCGGGTGTACCACA
TCATCAAGTCACAGTCGATCATCAAGCTGTACATATTCTACAACATGCTG
GAGGTGGGCGACCGGCTGTTGTCCGCTTTTGGTCAGGACACGATCGATGC
TCTCTTCTGGACGGCGACAGAACCAAAGAATTCCAAGCGAGAGCACTTTG
GAGTGCTTACGCACGTTCTCTTCACGCTAATCTATGTCTTCTTGCACAGC
GGACTGATCATGTTTCAGGCCACCTGTTTGAATGTGGCGGTGAACTCCAA
CAACAAGGGCCTGCTGACCATCATGATATCGAATAATTTCGTGGAGCTCA
AGGATCCGTGTTCAAGAAGTTCGACAAAACACCTGTTCCAATTGACCTGC
AGCGATGTACGAGAGCGATTCCATCTGTCTGTGCTCTGTCATGTGGTCAT
CCAGACCATGAGGAGTTTGACTGAGCATCACCAGTTCTGTGTATGCTGGC
CGACTGCTTGCGTGCTGTTCACGATTTCGATCGATGGGTGAGCATTGCTT
ATACACGCGATCCATGACTGCGAAGCATCTACAGGAATACCGACGCTTGG
CTAGAATGGACGACGGCTAGACGCACTCTCAGAATCATTCGGAATTGTGT
GTAC
FMO07670.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7218-RB | 2543 | CG7218-RB | 96..1244 | 9..1135 | 5095 | 97.5 | Plus |
| CG7218-RA | 2169 | CG7218-RA | 96..1244 | 9..1135 | 5095 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18163103..18163715 | 819..207 | 3065 | 100 | Minus |
| 3R | 32079331 | 3R | 18164103..18164302 | 208..9 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 18162779..18163034 | 1059..814 | 790 | 94.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:41 has no hits.
FMO07670.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:17 Download gff for
FMO07670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 92..1260 | 9..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:11 Download gff for
FMO07670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 89..1257 | 9..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:08 Download gff for
FMO07670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7218-RA | 96..1264 | 9..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:08 Download gff for
FMO07670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18164104..18164302 | 9..207 | 100 | | Minus |
| 3R | 18163104..18163714 | 208..818 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:11 Download gff for
FMO07670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13989826..13990024 | 9..207 | 100 | | Minus |
| arm_3R | 13988826..13989436 | 208..818 | 100 | <- | Minus |
