FMO07672.5prime Sequence
1186 bp (1015 high quality bases) assembled on 2008-11-03
> FMO07672.5prime
CAGTCGACATGAAGCTTCTGTTGGTTCTTCCACTTCTGGTGGCTGTGGTC
TCTGGCCAGGGATTCGGAGGCGGTGGATTTGGAGGCGGATTTGGAGGTGG
ACTCGGAGGCGGATTTGGAGGTGGACTCGGAGGCTTGGGCAACAATCGAG
TGGGTGGAGCTTTACAAAATGTGGCCGGCGCCGTTCAGAATGCCGTGGGC
AACATTGCCAAGGCTGTGCCCAAGGTGCCGCTGCTCTCAAACGTCCAGGA
CTTTGGTGACTTCTTGAGCCAATCTGGAAAGACCTATCTCTCCGCCGCTG
ATCGCGCTCTTCATGAAGGTGCCTTCGCTTCCACCAAGAACCTGGTGGAA
GCCGGAAACGCAGCCTTTGCCCAAGGAGTGCACACCTTCAAGCAGGCCGT
GAACGCCTTCGCCGATCTGACCCACTCTGAGTTCCTTAGTCAATTGACCG
GTCTGAAGAGAAGTCCGGAGGCTAAGGCTCGAGCTGCTGCCAGTTTGAAG
TTGGTCAACCTGCCTGCGAAGCCCATCCCGGATGCCTTCGATTGGCGCGA
GCATGGCGGTGTCACACCAGTCAAATTCCAGGGTACCTGTGGCTCCTGTT
GGGCCTTTGCCACCACTGGTGCCATTGAGGGACACACCTTCCGCAAGACC
GGCAGCCTGCCCAATCTCTCTGAGCAGAATCTGGTCGACTGTGGTCCGGT
GGAGGACTTTGGCCTGAATGGCTGCGATGGTGGCTTCCAGGAGGCCGCAT
TCTGTTTCATCGATGAGGTGCAAAAGGGTGTGTCCCAGGAGGGGGCCTAT
CCCTACATTGACAACAAGGGCACGTGCAAGTACGATGGGCAGCAAGTCCG
GGAGCCACCCTCCAGGGGATTCCCCGCTTATTCGCCCAAGGACGAAGGAG
CAGCTGAAGAAGTGGGTGGCACTTCTGGGACCAGTTGCCTGTTCGGTGAA
TTGGTTTGGAGACTCTAAAACTACGCCGGTGCATCTATAACGACGATGAG
TGCCACAGGGCGAGCCGACCACTCCATTCTGGTCGTTCGGTTACGGATCG
GAGAAAGGACAGGATTACTGGAATTGTCAAGTACTTCTTGGGACGACACC
TGGGGCTAAAAGGGCTTACTTTCCGGCCTGCTCGCCGCAAAACAGACTGC
TTCTCATGTCTGAGAGAAGTGTCCTCCTCAATCCCA
FMO07672.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4847-RE | 1308 | CG4847-RE | 36..1175 | 9..1153 | 5060 | 97.1 | Plus |
| CG4847-RD | 1501 | CG4847-RD | 229..1368 | 9..1153 | 5060 | 97.1 | Plus |
| CG4847-RC | 1313 | CG4847-RC | 41..1180 | 9..1153 | 5060 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17513050..17513687 | 476..1116 | 2390 | 95.7 | Plus |
| 2R | 25286936 | 2R | 17512458..17512715 | 9..266 | 1290 | 100 | Plus |
| 2R | 25286936 | 2R | 17512775..17512985 | 266..476 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:54:48 has no hits.
FMO07672.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:16 Download gff for
FMO07672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4847-RD | 215..1352 | 1..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:42 Download gff for
FMO07672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4847-RC | 37..1169 | 1..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:04 Download gff for
FMO07672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4847-RC | 37..1169 | 1..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:04 Download gff for
FMO07672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17512449..17512715 | 1..266 | 98 | -> | Plus |
| 2R | 17512776..17512984 | 267..475 | 100 | -> | Plus |
| 2R | 17513050..17513711 | 476..1142 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:42 Download gff for
FMO07672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13399954..13400220 | 1..266 | 98 | -> | Plus |
| arm_2R | 13400281..13400489 | 267..475 | 100 | -> | Plus |
| arm_2R | 13400555..13401216 | 476..1142 | 95 | | Plus |
