FMO07673.5prime Sequence
1200 bp (965 high quality bases) assembled on 2008-11-03
> FMO07673.5prime
CAGTCGACATGTTTTGCAAAGTTGAAAGCACATTGAATTGGGAGAGCCGT
CAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAATGCAATTGGA
CGTCGAATTAATTGATAATCTAATGAATTACGCCGAAAAAATAGATGAGA
AGGCTTCCCAACTAAAGAGACTAGCCCAGGAACTAAGACAGCCTTTGCAC
TCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCTCCACAGTTT
TCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGGAAGAGTTTA
TGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGAAGAAAGTTA
CCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGTCTCAATCTT
CAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGGCCAACGGTC
TCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTGGATTGTTTT
GAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCAGGCATTACA
GTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACTCCGGGGTTT
ATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTGCAGGCTCGC
TGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGTACTTCTGGA
TCAACCTGATCTCGCAGACAATTCGATTAGCTTGCTGGACCAATTCAAGG
CCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGTGAAGGCTAC
AAGAGACTGTGCCGTTCCTCGTTCTCTCCTGACCCTTCAAACTCCACTGT
CGCTACAACAGCACCACCTCCGCCTTCCTGATCCTGCTCCCCTCAAAATG
GAGGAGATCTCTCTGGAGCCCATATAGTGTGTACCATGACATCCTGCCGG
ATAAGGATATCCAGCAGCTTATAACCTTGCGGAGCCACTACTGAAACCAC
AGAAATGTCTGACGAATAATAGAATGAGCAGGGAGCAGTACCGCACACGC
TCGGGGACCACTTTTGGAATAGCTGACTCAAGGATGCGAATTCCTGCCTC
AATCCGCAGTATTCCATTAATATTATCAATCGCTTGGAGTCCTACCTATT
ACATGACTTCTTCAGAAGAAAATCCGTGAACTCACAGAGACTTCGCGCAA
FMO07673.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaNE3-RA | 1627 | CG31017-RA | 8..1098 | 9..1088 | 5015 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30605076..30605488 | 666..1068 | 1430 | 95.4 | Plus |
| 3R | 32079331 | 3R | 30604827..30605020 | 473..666 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 30604188..30604348 | 9..169 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 30604405..30604558 | 168..321 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 30604615..30604767 | 320..472 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:05 has no hits.
FMO07673.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:24 Download gff for
FMO07673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE3-RA | 8..1197 | 9..1170 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:09 Download gff for
FMO07673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE3-RA | 8..1197 | 9..1170 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:47 Download gff for
FMO07673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE3-RA | 8..1197 | 9..1170 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:47 Download gff for
FMO07673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30604188..30604348 | 9..169 | 100 | -> | Plus |
| 3R | 30604407..30604558 | 170..321 | 100 | -> | Plus |
| 3R | 30604617..30604767 | 322..472 | 100 | -> | Plus |
| 3R | 30604827..30605020 | 473..666 | 100 | -> | Plus |
| 3R | 30605077..30605608 | 667..1170 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:09 Download gff for
FMO07673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26429910..26430070 | 9..169 | 100 | -> | Plus |
| arm_3R | 26430129..26430280 | 170..321 | 100 | -> | Plus |
| arm_3R | 26430339..26430489 | 322..472 | 100 | -> | Plus |
| arm_3R | 26430549..26430742 | 473..666 | 100 | -> | Plus |
| arm_3R | 26430799..26431330 | 667..1170 | 91 | | Plus |
