FMO07676.5prime Sequence
1182 bp (1047 high quality bases) assembled on 2008-11-03
> FMO07676.5prime
CAGTCGACATGCCCATTGAGTGCCTTATATCATTTGATAATAATCCACAA
GGTGTCTACTATGCCGGACAGGAGCTATCCGGCGTTGTTGATCTCAGCGT
CGACGCCACGAAGCGCATTAAAGGCATCCACGTCACCGTCAGCGGCTATG
CCAAGATACGCTGGATAAAAAAGGGATATCCGCGCGACAGCGAGCGCGCC
ATGTGCCGTGCCTACCGATCGTATCTGTCCTCGCGGTCCTACGTCCTCGG
ATCCTGCGCGAACAACTCGAGCATCGACTGGCCGGCCGGCGAGTACTCGT
ACACCTTCCACGTGATTCTGCCCGACAATCTGCCTACGTCCTTCGACGGC
AAGTATGGCCAGATCCACTACGAGATCATAACAACGATCGAAAGGGCCGC
TCGCCACCCGAAGGTCTTTAAGCTGCCATTTACCGTAATACAACCGCTGG
ACCTGAACGCAGATGCAATTTACAGGGTTCCTCTGGAGATCCTCGATCGG
AAACGGTTCTGGAGCTTCTGCTGCCCCACAGGCCCGCTGACGGTGAAGTT
CTCGACGCCTTACTGCGGATATGCGCCCGGCCAGAAGATCCACTTCGTGC
TGTACATCAACAACGAGTCCTCGATCGACATAATCGAATGCGAGGTCAAG
CTGAAGCAGGAGGTGAGCTACGAGTCGCACGATCCGCAGCATGAGTACCG
CTACGACAAGCACCTGATTGCGCGGAAGCAGTTCGGAAACGTGCTGAGAT
GGTCGAGAAAGGTGTACCGTGGGTATCTCGACCTGCCGTCGATACCGCCC
ACTTCGGTGAAGCCCACGTGCCCCATTAGCGTTAACTATTCGATTAAGAT
CATCGTGACCCCACGGAGTTTCACTGGAAACTTAAGCTGAAGATTCCGCT
GACCATCGGCAGTATACCGATCATGGATGGTCCGGAGGCCCTGTTGCGTT
TCAATCGCCAGCAGCAACAGCACCAAGTAGTTAGTCAAATTTACAATGTC
GACGCAGCACGTCAAAGGATCGGGATCGTGATCGTGAATTGATGTGATCG
CGAGAGATCGAGAATCGAATCGGACGATATTGCTCAGTTCAGCACGCACG
TATCGCAGCATCACACCAACACATCTGAGCTGGGCGACTCTGCCACATAC
AATGATTGATTAGTAGGGTCAGTCCACGACCG
FMO07676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2993-RC | 3339 | CG2993-RC | 862..1990 | 9..1121 | 5115 | 97.9 | Plus |
| CG2993-RB | 3276 | CG2993-RB | 862..1990 | 9..1121 | 5115 | 97.9 | Plus |
| CG2993-RA | 2961 | CG2993-RA | 862..1990 | 9..1121 | 5115 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7807202..7807768 | 1037..476 | 2585 | 99.1 | Minus |
| 3R | 32079331 | 3R | 7807972..7808328 | 478..122 | 1785 | 100 | Minus |
| 3R | 32079331 | 3R | 7809038..7809153 | 124..9 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:00 has no hits.
FMO07676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:19 Download gff for
FMO07676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2993-RA | 830..1961 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:16 Download gff for
FMO07676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2993-RA | 856..1987 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:18 Download gff for
FMO07676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2993-RA | 856..1987 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:18 Download gff for
FMO07676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7807202..7807767 | 477..1037 | 99 | <- | Minus |
| 3R | 7807974..7808326 | 124..476 | 100 | <- | Minus |
| 3R | 7809039..7809159 | 1..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:16 Download gff for
FMO07676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3632924..3633489 | 477..1037 | 99 | <- | Minus |
| arm_3R | 3633696..3634048 | 124..476 | 100 | <- | Minus |
| arm_3R | 3634761..3634881 | 1..123 | 96 | | Minus |
