FMO07678.5prime Sequence
1211 bp (834 high quality bases) assembled on 2008-11-03
> FMO07678.5prime
CAGTCGACATGGCCGACGTGGTCTTGGATCTGTACGCGGAGGACCTCGAC
AAGGACTTTGCCGGGCAGGCTCAGGACGAATTTGGAGGCGATGGAGTAGA
CCTATACGATGACATAGGCGGTCCCACCGAATCGGCCGCCTCAGGTGGCG
GGGGCGGTGGAACGCCCTCCGCAGATGGAGCCGCAGGGCCAGGCTCCGGG
GAACCCGGCGAACGGAATTCCGGTGGTCCCAATGGGGTGTACCATCAGAG
CAGTGGTAGCCTCACTCCGACCATGAATCGCCGCTACCAGCTTTATGTGG
GCAATCTCACATGGTGGACCACTGACCAGGATATCACCAATTCGCTGCGA
GACATTGGCGTGAGTGATCTACAGGAAGTGAAGTTTTTTGAGAACAGGGC
CAACGGTCAGTCGAAGGGCTTCAGTGTAATCTCCCTCGGCTCAGAATCTA
GCCTGCGCGCCGTGCTCGACCAGCTGCCCAAGAAGGAGATGCACGGCCAA
GCGCCGGTGGTCACGTATCCCAGCAAGCAGGCACTCACCCAATTCGAGAG
TCTGCAAAAGACGCGTCCAGTGCCGCCGCCGCAGCAGAATGGACCGCCCA
GGGGTCCGGCACCACCCAGTATGGGTGGCGGGCCAATGCCCACCGGACAT
CCAGGAGGACCGCAAGGAGGTGGACCACCGGGACATCCACCGCGCGGGAT
GAACTCCATCATGCATCCGGGCCAGTACCGACCGCAGCACATGTCGCAGG
TTCCCCAGGTGGGCGGACCCAACTCAAGACCTCCACGAATGCAGCCGCCC
ATGCATCCGCAAGGCGGGCTCATGGGGAACCAACAGCCGCCCACCCGGTA
TCCGTCAGCGCAAGGCCAATGACAAGTCAGCGGCCAGGCGGGCCGCGACC
AGTCCACCGAACGGACCACCGCAGCGACAATGTTCCAAGGAGGCCCAATG
GGCATGCCCGTCAGGTCGGCAGGTACCCGAATGACGTCGTCACCCATTGC
CACGTGGCTTTCCCGCACCTAAGTCCGTCATGTGACTTCCCCTGAACCAA
GATCAGAGTGAACCACAGGTGACACCGCAACCCCGAAAGTAACCAGGATT
CTTAATCAGCCTGATGACTGTCTAGATCGGAGCATGGCGGCCCGTCCAGA
ACAGTCCACCTAGCAGTATGGCACCGCACAAAGTATGAACACAGTGCACC
CCATCATTTAC
FMO07678.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7185-RA | 2862 | CG7185-RA | 364..1404 | 7..1042 | 4640 | 97 | Plus |
| CG7185-RB | 2721 | CG7185-RB | 364..1151 | 7..794 | 3895 | 99.6 | Plus |
| CG7185-RB | 2721 | CG7185-RB | 1151..1263 | 932..1042 | 210 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8313957..8314679 | 794..72 | 3570 | 99.6 | Minus |
| 3L | 28110227 | 3L | 8313016..8313153 | 928..793 | 500 | 94.2 | Minus |
| 3L | 28110227 | 3L | 8315071..8315139 | 75..7 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:13 has no hits.
FMO07678.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:17 Download gff for
FMO07678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7185-RA | 342..1330 | 1..983 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:01 Download gff for
FMO07678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7185-RA | 357..1345 | 1..983 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:40 Download gff for
FMO07678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7185-RA | 357..1345 | 1..983 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:40 Download gff for
FMO07678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8313011..8313151 | 795..932 | 93 | <- | Minus |
| 3L | 8313957..8314676 | 75..794 | 99 | <- | Minus |
| 3L | 8315072..8315143 | 1..74 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:01 Download gff for
FMO07678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8306111..8306251 | 795..932 | 93 | <- | Minus |
| arm_3L | 8307057..8307776 | 75..794 | 99 | <- | Minus |
| arm_3L | 8308172..8308243 | 1..74 | 95 | | Minus |
