FMO07679.5prime Sequence
1184 bp (1000 high quality bases) assembled on 2008-11-03
> FMO07679.5prime
CAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAGCCGGCTAC
ATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTACAACGTCAT
CTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAAACTGCCGG
AGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCAACTTCTAT
AGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTCCAGGAGCA
CAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGTGGGTGAGT
CCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCGGCACCAAT
GTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTCGTGTACAG
CTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGTGACCGAGG
AGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTAAATATTTC
ACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGTTGGGCAGT
GGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAGTGGTCGGA
TTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCTACATCGCA
CAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGCAGCGACTT
TCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACATCGTGGACC
TGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACATCGCGGAG
ACGGGCTTTTTCGCCTACAATTTGGGCACCGGCGTGGGCTACTCGGTGCT
GGACATGGTGAAGCGTTTGAGAAGGCCTCCGGCAAGAATGTCAACTACAC
TCTGGTGGACCGACGTCCGAGATGTGCCACTTGCTATGCGACGCACGTTG
GCGGATAAGAAGCTGGGCTGAAGCGAGCGTGCATCGACAGATGTGCGAGG
AACACGTGCGCTGGAAGAGCAGAACCAAACGGTATGCAACAGCAAGCTTC
TAGACATTCGTTGGCCGCGTCCAGGTAAGGTCTATCTATCTATCTAATCT
ATCCAACTAGCCTAGGAATCTGCATGACATGCTGATTCCACCAATAAAAA
GCCTCGCGCGACACGACACGTCCTGGACAACATT
FMO07679.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gale-RB | 1538 | CG12030-RB | 280..1322 | 9..1037 | 4800 | 98.3 | Plus |
| Gale-RA | 1757 | CG12030-RA | 499..1541 | 9..1037 | 4800 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 650582..651020 | 538..970 | 1885 | 97.9 | Plus |
| 3L | 28110227 | 3L | 650231..650523 | 247..539 | 1465 | 100 | Plus |
| 3L | 28110227 | 3L | 649180..649419 | 9..248 | 1200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5077..5115 | 415..377 | 123 | 79.5 | Minus |
FMO07679.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:15 Download gff for
FMO07679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12030-RA | 533..1586 | 1..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:52 Download gff for
FMO07679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gale-RA | 495..1548 | 1..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:58 Download gff for
FMO07679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gale-RA | 495..1548 | 1..1046 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:58 Download gff for
FMO07679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 649180..649419 | 9..248 | 100 | -> | Plus |
| 3L | 650233..650523 | 249..539 | 100 | -> | Plus |
| 3L | 650584..651102 | 540..1046 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:52 Download gff for
FMO07679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 649180..649419 | 9..248 | 100 | -> | Plus |
| arm_3L | 650233..650523 | 249..539 | 100 | -> | Plus |
| arm_3L | 650584..651102 | 540..1046 | 95 | | Plus |
