FMO07680.5prime Sequence
1203 bp (1045 high quality bases) assembled on 2008-11-03
> FMO07680.5prime
CAGTCGACATGTCGGACTCGGAAGTCAGTAATATGTCGGATAGTGGCTCC
GAAGATGGATCCATTTCCAACAAGTCGCAACGGAGTGCCCGCTCCAAGTC
AAGATCGCGTTCCAGGTCCGGTTCCAGGGGATCTCGCTCCGTTTCCAGGT
CCAGATCACGCTCTCAATCGGGCCACTCTAGATCTGGCTCGGAATCTCCA
CAGAGACGAGATAATCGCGGCAAGAGCGATGAATCCGGCGAAGAGGAGGA
GGAGCCACCAGGTGAGGACATCGATTCCGAGGAGTACGATGAGGAGGAGA
ACGACGATCACCCAAGGAAGAAGAAAAAGAAGGAGCGTTTTGGGGGCTTC
ATCATTGACGAGGCCGAAGTGGACGATGAAGTCGATGAAGATGACGAGTG
GGAAGAGGGTGCCAATGAAATTGGCATTGTTGGCAATGAGATCGATGAGC
TGGGCCCCACAGCCAGGGATATTGAAATTCGACGACGAGGCACAAACCTT
TGGGACACCCAAAAGGAGGACGAGATAGAGGAGTATCTCCGTAAGAAGTA
CGCCGATGAGTCAATTGCAAAACGCCACTTTGGAGATGGCGGTGAAGAGA
TGTCAGACGAAATTACCCAACAAACTCTATTGCCCGGCATCAAGGATCCC
AATTTGTGGATGGTGAAATGTCGTATAGGCGAGGAGAAGGCCACAGCGCT
TCTTCTAATGCGAAAGTACTTAACCTACCTGAACACAGACGATCCATTGC
AAATCAAATCTATTATTGCACCAGAGGGCGTCAAGGGATACATTTACCTG
GAGGCCTATAAGCAGACTCATGTTAAAACTTGCATTGATAACGTGGGTAA
TCTTCGGATGGGCAAATGGAAACAGGAAATGGTGCCCATCAAGGAGATGA
CGGATGTGCTAAGTGGTCAGGAGCAGTTGGCCTTAAAGTGAAACAATGGG
TGCGCTTGAGCGCGTCTCTACAGACGACATCGCACAAGGTGGACTACGTG
ATCTGCCCAGACCAAGTACATCTTAGTTGCTCCTCGCATGACTACCCACC
GCATGGCGAGGGAGCTTGGCGACAAAAGCACGGAGGGTGACGATTGGCAA
AGCGCAGAAAAACGCCGCCCAGCAGCCTTAACCTTTTGAATCAGCCGTAA
GCCATTGAGGTAAATACTCAATGTGGTAATTCCGGGCCTCTCGAGGGAAA
CCG
FMO07680.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt5-RA | 3460 | CG7626-RA | 117..1258 | 9..1139 | 5020 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19437972..19438345 | 9..382 | 1870 | 100 | Plus |
| 2R | 25286936 | 2R | 19438785..19439148 | 644..1000 | 1445 | 97.5 | Plus |
| 2R | 25286936 | 2R | 19438590..19438728 | 506..644 | 680 | 99.3 | Plus |
| 2R | 25286936 | 2R | 19438407..19438531 | 381..505 | 625 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 1378..1408 | 1083..1113 | 119 | 87.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12556..12586 | 1083..1113 | 119 | 87.1 | Plus |
FMO07680.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:14 Download gff for
FMO07680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt5-RB | 111..1329 | 1..1203 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:04 Download gff for
FMO07680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt5-RA | 112..1330 | 1..1203 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:41 Download gff for
FMO07680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt5-RA | 112..1330 | 1..1203 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:41 Download gff for
FMO07680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19437967..19438343 | 1..380 | 98 | -> | Plus |
| 2R | 19438407..19438531 | 381..505 | 100 | -> | Plus |
| 2R | 19438590..19438727 | 506..643 | 99 | -> | Plus |
| 2R | 19438785..19439235 | 644..1082 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:04 Download gff for
FMO07680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15325472..15325848 | 1..380 | 98 | -> | Plus |
| arm_2R | 15325912..15326036 | 381..505 | 100 | -> | Plus |
| arm_2R | 15326095..15326232 | 506..643 | 99 | -> | Plus |
| arm_2R | 15326290..15326740 | 644..1082 | 94 | -> | Plus |
