FMO07682.5prime Sequence
1198 bp (1050 high quality bases) assembled on 2008-11-03
> FMO07682.5prime
CAGTCGACATGGCAACCGTGTTTCTTGGAACTGTCGTGCACACCAAGTCG
TTCAGCGAGTTTGAGTCCTTTGAAGGAGGATTCCTGGCAGTGGACGACGC
TGGCAAGATAATAGGAGTGGGACAAGACTACCATGCGTGGGCAAGCAGCA
ATCCGGCCCACGCCAAGGGTCTGACCGAGGTTCACCTGTCGGACTACCAG
TTCCTCATGCCGGGCTTCGTCGACTGCCACATACACGCCCCGCAGTTTGC
GCAACTGGGACTGGGACTAGACATGCCTCTTCTGGACTGGTTGAACACAT
ACACTTTCCCGCTGGAGGCGAAGTTTTCCAACCACCAATACGCCCAGCAG
GTCTACCAGGGTGTGGTCGAAGCAACACTGCGGTGCGGAACCACTCTGGC
GTCCTATTTCGCCACCAACCATCTGGAGTCAACGCTGACCTTGGCGCGGG
AGGCGGTGCGTCAAGGCCAGCGGGCACTGATAGGCAAGGTCTGCTCCAAC
TGCAACAGCCCCGAGTTTTACGTGGAGACTGCGGAAGAGTCGGTCAGTGC
AACCCTGGCTTTCGTGGAGGGCGTGCGGAAGCTCGGCAGCCCGATGGTGA
TGCCAACGATTACGCCCCGCTTTGCCCTTAGCTGCAGCAAGGAGCTGCTA
AAGAGTCTGGGCGATATAGCAAAGCGATTTGACCTGCATATCCAGAGTCA
CATCAGCGAAAACCTGGAAGAGATCGAGATGGTAAAGGGGATATTTAAGA
CCAGCTATGCCGGAGCATACGACGAGGCTGGACTGCTAACGAATAAGACT
GTACTGGCTCACGGCGTGCATCTGGAGGACGACGAGGTGGCACTTCTTAA
AGTCCGGGGGTGCTCGGTAGCCCACTGTCCCACTTCGAACACAATGCTAA
GCTCCGGTCTGTTGCGATGTCCAACGCTGGTGAGCGGCGGCGTGAGCGTA
GTCTCGGCACAGACGTTTCGGGGGAAACTCGTCCTCGATCAGACGTTCTG
CTTCGCGCATGACGTGTCAAAAACACTTAGAACTTTTAGAGCGAAACATC
GCGGGACGGGTGTGTCCAAAACCAGGATTCATAACATCAATGAGTACAAG
CAGGCCTTACTGCCTTGGTGGCCCAAGCGCTTCCTGATCCTGAACCGACC
TGCCCTAGAAGAATCAAGTCTGGTGGTGAAAGTCAGCGCTCTCTCATT
FMO07682.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DhpD-RA | 1590 | CG18143-RA | 96..1207 | 9..1105 | 4960 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4228148..4228421 | 797..524 | 1370 | 100 | Minus |
| 3R | 32079331 | 3R | 4228727..4228990 | 369..106 | 1320 | 100 | Minus |
| 3R | 32079331 | 3R | 4228479..4228634 | 524..369 | 780 | 100 | Minus |
| 3R | 32079331 | 3R | 4227915..4228094 | 974..796 | 755 | 98.3 | Minus |
| 3R | 32079331 | 3R | 4229045..4229143 | 107..9 | 495 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| McClintock | 6450 | McClintock McCLINTOCK 6450bp | 1461..1525 | 1026..1089 | 115 | 66.2 | Plus |
FMO07682.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:09:28 Download gff for
FMO07682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18143-RA | 100..1229 | 1..1118 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:22 Download gff for
FMO07682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DhpD-RA | 89..1218 | 1..1118 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:47 Download gff for
FMO07682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DhpD-RA | 89..1218 | 1..1118 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:47 Download gff for
FMO07682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4228148..4228421 | 524..797 | 100 | <- | Minus |
| 3R | 4228480..4228634 | 369..523 | 100 | <- | Minus |
| 3R | 4228728..4228988 | 108..368 | 100 | <- | Minus |
| 3R | 4229045..4229147 | 1..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:22 Download gff for
FMO07682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 53870..54143 | 524..797 | 100 | <- | Minus |
| arm_3R | 54202..54356 | 369..523 | 100 | <- | Minus |
| arm_3R | 54450..54710 | 108..368 | 100 | <- | Minus |
| arm_3R | 54767..54869 | 1..107 | 96 | | Minus |
