FMO07685.5prime Sequence
1226 bp (850 high quality bases) assembled on 2008-11-03
> FMO07685.5prime
CAGTCGACATGAGCAAACAATTGGCGCGCCATGTGGGCCAGCTGAACAGC
CTCCTGAAGACGGCGGCCACCGCCTCCTCGGTCTCCGCCCACAACAACTA
CTTCACCTACGTGCGGGAGCTGTCGCATCCCATCGCTCGAGAGCCTCCAA
TCGTCAAGCCGGAAGAGGCCGTGGCATGTGTAAAATCCGGTGACACGGTT
TTCGCCGGAGGAGCATCCGCCACGCCCGTGGCTCTGCTGAACGCGATGGC
CAAGCACGGAAAGAGCAACAACCTGGAGTGCGTCACGGTGTGCCACATGC
ACACGGAGGGTCCTGGCGAGTACGCCAAGCCGGAGTACAAGGACCATTTC
CGTTCAAACTCCTTCTTCATGGGCGCCAACGTGCGCAAGGCTGTTGCCGA
CGGTCGTGGCGATAATGTGCCGATCTTCCTTCACGAGATCCCGAATCTTT
TCTACAAGCAGATCGTAAAGCCAGATGTGTCCTTCATCCACGTGTCGCCG
CCGGATAACCACGGCTACTGCTCCCTCGGCACCAGCGTCGATTGTGTGCG
CGCTGCGCTGCTCAACTCGAAGCTCATTGTGGCTCAAATCAATCCCAAGA
TGCCGCGCACCTTCGGCGATGCCATCATTCACAAGTCTCACTTCGACCTC
GCCATCGAGGTGACCGATGATCTGCCTCAGCACGGAACTGGTAAGATTTC
CGAAGTGGAGAAGAAGATCGGCAAGCTCATTGCCGAGAACCTCGTCAAGG
ACGGCGCCACCCTGCAGATGGGCATTGGCAGCATCCCAGACGCCGTACTC
GCCGCCCTGCACAACCAATAGGATCTGGGCATCCACTCCGAGATTTCCCA
ACGGTGTCGTTGAGCTCGTGCGCAAGGGATGCGTCACTACAGCAAGAAGA
AGATGCCCCAGGGCAGAATGTGGGGCTCCATTCCTCATCGGTGACAGGCT
CTGTACGACTACGTGACCAACAATCCCTTGCTCGAGTGTTCGCCATCGAC
TATGTGAACAACTCCAGCATTGGTGGAAACAGCAGCCTCGATGACGGCCA
TTCATCAGCTGATCGAGGTGATACTGGACTGAAACAGGTGTGCTCTAAGG
CTCGATTGGATCCCCGCTCTACTCCGGCACAGCGATACGTGGTGACTTCA
TACGGAACGGGCGAGTTCTCGAATACTGGAGTGTGCCAAATATATGTGCA
GTGCCATTCACACTCACAAAAGAGCG
FMO07685.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7920-RC | 1791 | CG7920-RC | 170..1289 | 8..1128 | 4870 | 96.6 | Plus |
| CG7920-RA | 1910 | CG7920-RA | 289..1408 | 8..1128 | 4870 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30011669..30012062 | 582..189 | 1940 | 99.5 | Minus |
| 3R | 32079331 | 3R | 30011208..30011608 | 979..582 | 1585 | 95.3 | Minus |
| 3R | 32079331 | 3R | 30014811..30014996 | 193..8 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:56 has no hits.
FMO07685.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:50 Download gff for
FMO07685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 361..1495 | 1..1134 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:36 Download gff for
FMO07685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 281..1415 | 1..1134 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:33 Download gff for
FMO07685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 281..1415 | 1..1134 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:33 Download gff for
FMO07685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30011203..30011607 | 583..984 | 95 | <- | Minus |
| 3R | 30011669..30012061 | 190..582 | 99 | <- | Minus |
| 3R | 30014815..30015004 | 1..189 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:36 Download gff for
FMO07685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25836925..25837329 | 583..984 | 95 | <- | Minus |
| arm_3R | 25837391..25837783 | 190..582 | 99 | <- | Minus |
| arm_3R | 25840537..25840726 | 1..189 | 98 | | Minus |
