FMO07687.5prime Sequence
1187 bp (1033 high quality bases) assembled on 2008-11-03
> FMO07687.5prime
CAGTCGACATGTCTGCTGAAGCCGAAGCAATCGTCACAACGGCAACTGCC
GATGTATCATCCCCAAGCAAGACAGTGGCTGTGGAGCCCGTTGCTGCTGA
TACAACTCCGGACAATGCTCCGGCTGTGTCCACCGAGGGAAGCGGAAAGG
CAGAGCAGGAACGGGCAGAGAAAATACTTAAAGGCAAGGAGCTGTTCAGC
CAGGGATCGCGCAACTTCCTGGTCAAGAGCTACGACGAGGCAGCTGACGA
GCTGAGCCAGGTGTGCCAACTGTACGAGGAAGTCTACGGGGAACTGGCCG
ATGAGCTGGGTCAGCCCCTATTGCTCTATGCAAAGGCATTAATTGCAATG
GCCTTGGACGAGAACAAAGTGATTGATGTGCCTGACGAGGCTGCCGATGA
TGATGACGAGGATGTGGACGACGACGAGGAAGAAAGTGCCGAAGATGGAG
CGGCTAAGAAGGAGGAAAAGAAAGACACCAAGGAGGCAGCAAATGGTGCA
AGCAGCTCTAACGGCAAGGAACTGGACACCATCAAGGAAGGGTCCGATGA
GGCAGACTCTACCGGGGAAGCCGAGCAAGCTCAAAGTGATGAAAAGCCCT
CTAAGAAGGTACCGACCGGCGTGGATGAGGTCAGCAGCAGCAATGGCGGT
GGCGGAGCTGCCGTCAACGATGACGAGCGACCGAGCACATCGAATGGTGA
GGTCACAGCTAGTTGTTCCAATGGTGCAGCACCTGCTGTAGAGGAAGAAC
CCGAAGAAGAGGAAGGAGTTAGCGGAAGTTTGCAGTTGGCCTGGGAAATT
CTAGAGGCGGCTGCTCAGATCTTCTCGCGCCAAGGGCTCAGTGGACTCCC
CTACTTGGCTGAGGTTCAGACTGAGCTGGCTAACATTGAGTTTGAGAATG
GAATACTAGAGGCGGCACGCGAAGATTATGAGAAAGCACTGAAGATCCAC
GAGAGCTGCCACAGAAACCGACGTGCTTTGCCGAGTTGCATTACAAGATC
GGGCTGACTATTTGATGCAGCAACTCAACAAGAAGGACGACAGCACTGCG
TCATCAGCGTGTTGATCGAAGAGAATGCCGAGATAATGCAAGACGACCTA
GCGAGCCGACAAACCATTTGTTGATTGAGACTTAGCCTAATTAGGCAGAT
CAGATTCGAAGAAGTGTCAGCCCGAACCATTGTCGTA
FMO07687.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8223-RB | 2253 | CG8223-RB | 470..1589 | 9..1111 | 5155 | 98.3 | Plus |
| CG8223-RA | 1999 | CG8223-RA | 216..1335 | 9..1111 | 5155 | 98.3 | Plus |
| CG34135-RC | 7398 | CG34135-RC | 3552..4156 | 930..326 | 3025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8752514..8753118 | 326..930 | 3025 | 100 | Plus |
| 3R | 32079331 | 3R | 8752082..8752398 | 9..325 | 1585 | 100 | Plus |
| 3R | 32079331 | 3R | 8753180..8753310 | 930..1053 | 310 | 93.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:02 has no hits.
FMO07687.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:14:48 Download gff for
FMO07687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8223-RA | 199..1295 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:12 Download gff for
FMO07687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8223-RA | 207..1303 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:24 Download gff for
FMO07687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8223-RA | 207..1303 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:24 Download gff for
FMO07687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8752073..8752398 | 1..325 | 98 | -> | Plus |
| 3R | 8752514..8753118 | 326..930 | 100 | -> | Plus |
| 3R | 8753181..8753346 | 931..1084 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:12 Download gff for
FMO07687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4577795..4578120 | 1..325 | 98 | -> | Plus |
| arm_3R | 4578236..4578840 | 326..930 | 100 | -> | Plus |
| arm_3R | 4578903..4579068 | 931..1084 | 92 | | Plus |
